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spig-9 Minor capsid protein [ Caenorhabditis elegans ]

Gene ID: 179846, updated on 4-Jan-2025

Summary

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Official Symbol
spig-9
Official Full Name
Minor capsid protein
Primary source
WormBase:WBGene00009995
Locus tag
CELE_F53F4.13
See related
AllianceGenome:WB:WBGene00009995
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in amphid sheath cell and phasmid sheath cell. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See spig-9 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (13611337..13611882, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Flavin-containing monooxygenase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Nucleotide-diphospho-sugar transferase domain-containing protein Neighboring gene pseudo Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C. elegans feed yolk to their young in a form of primitive lactation. Kern CC, et al. Nat Commun, 2021 Oct 5. PMID 34611154, Free PMC Article
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Minor capsid protein
NP_506371.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13611337..13611882 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073970.7 → NP_506371.1  Minor capsid protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506371.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20724
    Conserved Domains (1) summary
    pfam14747
    Location:24 → 95
    DUF4473; Domain of unknown function (DUF4473)
Nucleotide Protein
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