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LOC114324129 peptidyl-prolyl cis-trans isomerase FKBP42 [ Camellia sinensis ]

Gene ID: 114324129, updated on 21-Dec-2023

Summary

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Gene symbol
LOC114324129
Gene description
peptidyl-prolyl cis-trans isomerase FKBP42
Gene type
protein coding
RefSeq status
MODEL
Organism
Camellia sinensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia
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Genomic context

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See LOC114324129 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current AHAU_CSS_1 (GCF_004153795.1) Unplaced Scaffold NW_021025367.1 (2553367..2564989, complement)

NW_021025367.1Genomic Context describing neighboring genes Neighboring gene maspardin Neighboring gene uncharacterized LOC114324130 Neighboring gene nuclear pore complex protein NUP107-like Neighboring gene nuclear pore complex protein NUP107-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021025367 Unplaced Scaffold Reference AHAU_CSS_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome and metabolite analysis identifies nitrogen utilization genes in tea plant (Camellia sinensis). Li W, et al. Sci Rep, 2017 May 10. PMID 28490757, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peptidyl-prolyl cis-trans isomerase FKBP42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camellia sinensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AHAU_CSS_1 Primary Assembly

Genomic

  1. NW_021025367.1 Reference AHAU_CSS_1 Primary Assembly

    Range
    2553367..2564989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028271870.1 → XP_028127671.1  peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1

    UniProtKB/TrEMBL
    A0A4S4F203, A0A7J7HKQ2
    Conserved Domains (3) summary
    COG0457
    Location:186 → 320
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:231 → 260
    TPR; TPR repeat [structural motif]
    pfam00254
    Location:63 → 157
    FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

  2. XM_028271871.1 → XP_028127672.1  peptidyl-prolyl cis-trans isomerase FKBP42 isoform X2

    Conserved Domains (3) summary
    TIGR00990
    Location:110 → 272
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    sd00006
    Location:152 → 199
    TPR; TPR repeat [structural motif]
    pfam00254
    Location:11 → 96
    FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
Nucleotide Protein
Heading Accession and Version

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