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LOC103865660 ammonium transporter 2 [ Brassica rapa (field mustard) ]

Gene ID: 103865660, updated on 19-Jun-2024

Summary

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Gene symbol
LOC103865660
Gene description
ammonium transporter 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Brassica rapa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Genomic context

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See LOC103865660 in Genome Data Viewer
Location:
chromosome: A4
Exon count:
5
Annotation release Status Assembly Chr Location
103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A04 NC_024798.2 (19163107..19166271, complement)
101 previous assembly Brapa_1.0 (GCF_000309985.1) A4 NC_024798.1 (16471989..16475334, complement)

Chromosome A04 - NC_024798.2Genomic Context describing neighboring genes Neighboring gene probable 2-oxoglutarate-dependent dioxygenase ANS Neighboring gene AMP deaminase Neighboring gene uncharacterized LOC103865999 Neighboring gene uncharacterized protein At5g01610 Neighboring gene abscisic acid receptor PYL4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ammonium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ammonium transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ammonium transporter 2
Names
ammonium transporter 2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Brap_v3.01 Primary Assembly

Genomic

  1. NC_024798.2 Reference CAAS_Brap_v3.01 Primary Assembly

    Range
    19163107..19166271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009143483.3 → XP_009141731.1  ammonium transporter 2

    UniProtKB/TrEMBL
    A0A2H5AC88, A0A3P6CY59, M4DKU9
    Conserved Domains (1) summary
    COG0004
    Location:16 → 445
    AmtB; Ammonia channel protein AmtB [Inorganic ion transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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