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LOC100246937 tubby-like F-box protein 8 [ Vitis vinifera (wine grape) ]

Gene ID: 100246937, updated on 3-Dec-2024

Summary

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Gene symbol
LOC100246937
Gene description
tubby-like F-box protein 8
Locus tag
VIT_00034528001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100246937 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (24217500..24223493, complement)
102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (19867314..19873294, complement)

Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109121621 Neighboring gene uncharacterized LOC104882691 Neighboring gene small nucleolar RNA snoR118 Neighboring gene uncharacterized LOC104882677 Neighboring gene auxin-induced protein 5NG4-like Neighboring gene trihelix transcription factor DF1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tubby-like F-box protein 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

    Range
    24217500..24223493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010666827.3 → XP_010665129.1  tubby-like F-box protein 8 isoform X1

    See identical proteins and their annotated locations for XP_010665129.1

    UniProtKB/TrEMBL
    A5AJR7
    Conserved Domains (2) summary
    pfam01167
    Location:116 → 420
    Tub; Tub family
    pfam12937
    Location:53 → 95
    F-box-like

  2. XM_010666825.3 → XP_010665127.1  tubby-like F-box protein 8 isoform X1

    See identical proteins and their annotated locations for XP_010665127.1

    UniProtKB/TrEMBL
    A5AJR7
    Conserved Domains (2) summary
    pfam01167
    Location:116 → 420
    Tub; Tub family
    pfam12937
    Location:53 → 95
    F-box-like

  3. XM_002267878.4 → XP_002267914.1  tubby-like F-box protein 8 isoform X1

    See identical proteins and their annotated locations for XP_002267914.1

    UniProtKB/TrEMBL
    A5AJR7
    Conserved Domains (2) summary
    pfam01167
    Location:116 → 420
    Tub; Tub family
    pfam12937
    Location:53 → 95
    F-box-like

  4. XM_059735056.1 → XP_059591039.1  tubby-like F-box protein 8 isoform X2

    UniProtKB/TrEMBL
    A5AJR7, F6GY33

  5. XM_059735059.1 → XP_059591042.1  tubby-like F-box protein 8 isoform X2

    UniProtKB/TrEMBL
    A5AJR7, F6GY33

  6. XM_019216713.2 → XP_019072258.1  tubby-like F-box protein 8 isoform X1

    UniProtKB/TrEMBL
    A5AJR7
    Conserved Domains (2) summary
    pfam01167
    Location:116 → 420
    Tub; Tub family
    pfam12937
    Location:53 → 95
    F-box-like

  7. XM_019216712.2 → XP_019072257.1  tubby-like F-box protein 8 isoform X1

    UniProtKB/TrEMBL
    A5AJR7
    Conserved Domains (2) summary
    pfam01167
    Location:116 → 420
    Tub; Tub family
    pfam12937
    Location:53 → 95
    F-box-like

  8. XM_010666826.3 → XP_010665128.1  tubby-like F-box protein 8 isoform X1

    See identical proteins and their annotated locations for XP_010665128.1

    UniProtKB/TrEMBL
    A5AJR7
    Conserved Domains (2) summary
    pfam01167
    Location:116 → 420
    Tub; Tub family
    pfam12937
    Location:53 → 95
    F-box-like

  9. XM_059735057.1 → XP_059591040.1  tubby-like F-box protein 8 isoform X2

    UniProtKB/TrEMBL
    A5AJR7, F6GY33

  10. XM_059735055.1 → XP_059591038.1  tubby-like F-box protein 8 isoform X1

    UniProtKB/TrEMBL
    A5AJR7

  11. XM_059735058.1 → XP_059591041.1  tubby-like F-box protein 8 isoform X2

    UniProtKB/TrEMBL
    A5AJR7, F6GY33
Nucleotide Protein
Heading Accession and Version

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