txid339[Organism] - GEO DataSets

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Select item 2001415961.

Transcriptomic analysis of Xanthomonas campestris pv. campestris wild type vs two mutant

(Submitter supplied) To gain an understanding of the regulatory role of PilG and PilH in Xcc a set of global gene expression profiles,we performed transcriptome analysis.Transcriptome analyses that showed PilG and PilH regulating many genes involved chemotaxis and flagellar biosynthesis.Taken this data together it is clear the impact of PilG and PilH on the expression of specific genes at the transcriptional level accounts for the phenotypes seen in the ΔpilG and ΔpilH strains.

Organism:: Xanthomonas campestris pv. campestris str. 8004

Type:: Expression profiling by high throughput sequencing

Platform:: GPL25598
6 Samples

Download data: XLSX

Series

Accession:: GSE141596

ID:: 200141596

SRA Run Selector

Select item 2001675552.

Transcriptomic response of Xanthomonas campestris pv. campestris after exposure to allyl-isothiocyanate and indol-3 carbinol

(Submitter supplied) We performed a transcriptomic analysis of the necrotrophic bacteria Xanthomonas campestris pv. campestris exposed to two different isothiocyanates (allyl-isothiocyanate and indol-3-carbinol), searching for mechanisms of adaptation and detoxification of these chemicals.

Organism:: Xanthomonas campestris pv. campestris

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24162
6 Samples

Download data: TXT

Series

Accession:: GSE167555

ID:: 200167555

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001202923.

Chromatin immunoprecipitation sequencing of VgrR–DNA-binding landscapes

(Submitter supplied) ChIP-seq database identifies genes with promoter regions bound by VgrR in X. campestris pv. campestris grown under osmostress conditions

Organism:: Xanthomonas campestris pv. campestris str. 8004

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL25598
2 Samples

Download data: WIG

Series

Accession:: GSE120292

ID:: 200120292

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001057694.

A bacterial receptor PcrK senses the plant hormone cytokinin to promote adaptation to oxidative stress

(Submitter supplied) By analyzing the transcriptome of WT/ΔpcrR/ΔpcrK strains in the presence of 2iP and comparing gene expression level between them, we report genes with different expression levels between WT and ΔpcrR/ΔpcrK strains in the presence of plant cytokinin 2iP.

Organism:: Xanthomonas campestris pv. campestris

Type:: Expression profiling by high throughput sequencing

Platform:: GPL24162
3 Samples

Download data: TXT

Series

Accession:: GSE105769

ID:: 200105769

PubMed Similar studies SRA Run Selector

Select item 2000892675.

Xanthomonas campestris pv. campestris str. 8004 (Xcc 8004; Indian Isolate): Wild type vs xibR mutant, under the both iron-replete and iron-deplete conditions.

(Submitter supplied) Transcriptional profiling of low-iron stimulon and XibR influenced regulon using wild-type Xcc 8004 and xibR mutant grown under iron-replete and iron-deplete conditions. Trancriptional analysis under iron-deplete condition, mimicking in planta environment, provides greater insights into expression pattern of several virulence-associated functions under low-iron. A genetic screen sggested the involvement of XibR (Xanthomonas iron binding regulator) in iron-uptake and metabolism. more...

Organism:: Xanthomonas campestris pv. campestris str. 8004; Xanthomonas campestris

Type:: Expression profiling by array

Platform:: GPL22612
8 Samples

Download data: TXT

Series

Accession:: GSE89267

ID:: 200089267

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000329086.

Xanthomonas campestris pv. campestris 8004: wild type vs. ravA (or ravS or ravR) mutant

(Submitter supplied) Transcriptional profiling of Xanthomonas campestris pv. campestris 8004 comparing control wild type strain with ravA (or ravS or ravR) mutant The effects of mutating ravS, ravR and ravA on EPS synthesis, biofilm production and motility were very different , the factors responsible for these differences are not clear. With comparative analysis of the regualtion pathways by RavS, RavR and RavA, we can indentify different genes regulated by these three genes and maybe explain the different phenotypes caused by these genes mutations.

Organism:: Xanthomonas campestris pv. campestris

Type:: Expression profiling by array

Platform:: GPL14720
6 Samples

Download data: LSR

Series

Accession:: GSE32908

ID:: 200032908

Analyze with GEO2R

Select item 2000050877.

CGH analysis between Xcc strains and transcriptome analysis of Xcc 8004 grown in NYG and XVM2

(Submitter supplied) Xanthomonas campestris pathovar campestris (Xcc), the causal agent of black rot disease of cruciferous plants worldwide, is composed of phenotypically heterogeneous groups of strains. The knowledge about the genome diversity and phylogenetic relationships between Xcc strains with different origins are of great interest as they provide insight into the mechanisms of pathogenicity, host preferences and evolution of this pathogen. more...