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Links from GEO DataSets

Items: 20

1.

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other
Platforms:
GPL25554 GPL19224
20 Samples
Download data
Series
Accession:
GSE138151
ID:
200138151
2.

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [degradome]

(Submitter supplied) MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. more...
Organism:
Camellia sinensis
Type:
Other
Platform:
GPL25554
2 Samples
Download data: XLSX
Series
Accession:
GSE138150
ID:
200138150
3.

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [miRNA-seq]

(Submitter supplied) MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. more...
Organism:
Camellia sinensis
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL19224
9 Samples
Download data: XLSX
Series
Accession:
GSE138149
ID:
200138149
4.

Characterizing microRNAs and their targets in differnt organs of Camellia sinensis [RNA-seq]

(Submitter supplied) MicroRNAs (miRNAs) are a type of small non-coding RNAs, which play important roles in plant growth, development and stress responses. Tea (Camellia sinensis) prepared from tea tree is the oldest and most popular nonalcoholic beverages in the world, and has large economic, medicinal and cultural significance. Nevertheless, there are a few studies on the miRNAs and their functions in Camellia sinensis. more...
Organism:
Camellia sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19224
9 Samples
Download data: XLSX
Series
Accession:
GSE138148
ID:
200138148
5.

Identification and characterization of cold responsive microRNAs in tea plant (Camellia sinensis) based on high-throughput sequencing and their targets using degradome analysis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Camellia sinensis; Embryophyta
Type:
Non-coding RNA profiling by array; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL18106 GPL19224
11 Samples
Download data: TXT, XLSX
Series
Accession:
GSE61719
ID:
200061719
6.

Identification and characterization of cold-responsive microRNAs in tea plant (Camellia sinensis) and their targets using high-throughput sequencing and degradome analysis [miRNA-seq]

(Submitter supplied) We discovered 31 up-regulated miRNAs and 43 down-regulated miRNAs in ‘Yingshuang’, and 46 up-regulated miRNA and 45 down-regulated miRNAs in ‘Baiye 1’ in response to cold stress, respectively. A total of 763 related target genes were detected by degradome sequencing. The RLM-5’RACE procedure was successfully used to map the cleavage sites in six target genes of C. sinensis. These findings reveal important information about the regulatory mechanism of miRNAs in C. more...
Organism:
Camellia sinensis
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL19224
3 Samples
Download data: XLSX
Series
Accession:
GSE61718
ID:
200061718
7.

Identification and characterization of cold responsive microRNAs in tea plant (Camellia sinensis) based on high-throughput sequencing and their targets using degradome analysis [microarray]

(Submitter supplied) Solexa sequencing technology was used to perform high throughput sequencing of the small RNA library from the cold treatment of tea leaves. Subsequently, aligning these sequencing date with plant known miRNAs, we characterized 112 C. sinensis conserved miRNAs. In addition, 215 potential candidate miRNAs were found; among them, 131 candidates with star sequence were chosen as novel miRNAs. There are both congruously and differently regulated miRNAs, and line-specific miRNAs were identified by microarray-based hybridization in response to cold stress. more...
Organism:
Camellia sinensis; Embryophyta
Type:
Non-coding RNA profiling by array
Platform:
GPL18106
8 Samples
Download data: TXT
Series
Accession:
GSE53632
ID:
200053632
8.

PARE libraries for the identification of miRNA target genes in Norway spruce

(Submitter supplied) We constructed four PARE libraries for the identification of miRNA target genes in Norway spruce.
Organism:
Picea abies
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL19695
4 Samples
Download data: TXT
Series
Accession:
GSE65248
ID:
200065248
9.

Identification of conserved and species-specific microRNAs in tea plant (Camellia sinensis) by deep sequencing

(Submitter supplied) In this study, it is noticeable that 32 tea-specific miRNAs were confirmed on the base of genome survey, using deep sequencing and microarray hybridization, and many miRNAs might associate with secondary metabolites synthesis.
Organism:
Camellia sinensis
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL20107
1 Sample
Download data: TXT
Series
Accession:
GSE68267
ID:
200068267
10.

Small RNA Solexa sequencing of Chinese sacred lotus (Nelumbo nucifera Gaertn.)

(Submitter supplied) The total RNA were extracted from pooled tissues of leaves and flowers from several plants of sacred lotus using TRIzol reagent (Invitrogen) according to the manufacturer's instructions. Then small RNAs ranging in 18–30 nucleotides were size fractionated electrophoretically, isolated from the gel, ligated with the 5′ and 3′ RNA adapters. The ligated product was reverse transcribed and subsequently amplified using 10–12 PCR cycles. more...
Organism:
Nelumbo nucifera
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL19280
2 Samples
Download data: TXT
Series
Accession:
GSE62217
ID:
200062217
11.

Phased secondary small interfering RNAs in Panax notoginseng

(Submitter supplied) Recent results demonstrated that either non-coding or coding genes generate phased secondary small interfering RNAs (phasiRNAs) guided by specific miRNAs. Till now, there is no studies for phasiRNAs in Panax notoginseng (Burk.) F.H. Chen (P. notoginseng), an important traditional Chinese herbal medicinal plant species. Here we performed a genome-wide discovery of phasiRNAs and its host PHAS loci in P. more...
Organism:
Panax notoginseng
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL23359
7 Samples
Download data: TXT
Series
Accession:
GSE98118
ID:
200098118
12.

Analysis of microRNAs, phased small interfering RNAs and their functions in Rosa rugosa Thunb

(Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNAs that play important roles by regulating other genes. Rose, Rosa rugosa Thunb., is an important ornamental and edible plant, yet there are only a few studies on the miRNAs and their functions in rose. Here we carried out computational and experimental analysis of miRNAs, phased small interfering RNAs (phasiRNAs) and mRNAs in rose by analyzing 10 small RNA sequencing profiles from roots, petals, pollens, stamens, and leaves and 4 RNA-seq profiles in leaves and petals of rose. more...
Organism:
Rosa rugosa
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24893
4 Samples
Download data: FASTA, XLS
Series
Accession:
GSE113148
ID:
200113148
13.

Identification and comprehensive analysis of microRNAs and phased small interfering RNAs in Rosa rugosa Thunb

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Rosa rugosa
Type:
Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL24600 GPL24599
11 Samples
Download data: TXT
Series
Accession:
GSE110542
ID:
200110542
14.

Identification and comprehensive analysis of microRNAs and phased small interfering RNAs in Rosa rugosa Thunb [ncRNA-seq]

(Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNAs that regulate target mRNAs by inducing degradation or preventing translation of their target mRNAs. Rose, Rosa rugosa Thunb., is an important ornamental and edible plant, yet there are only a few studies on the miRNAs of rose. Here we carried out computational and experimental analysis of miRNAs and phased small interfering RNAs (phasiRNAs) in rose by analyzing 10 small RNA profiles from roots, petals, pollens, stamens, and leaves. more...
Organism:
Rosa rugosa
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL24599
10 Samples
Download data: TXT
Series
Accession:
GSE110490
ID:
200110490
15.

Genome-wide identification of microRNAs responsive to Ectropis oblique feeding in the tea plant (Camellia sinensis L.)

(Submitter supplied) micro RNA identification of tea plant
Organism:
Camellia sinensis
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL20107
2 Samples
Download data: XLS
Series
Accession:
GSE98474
ID:
200098474
16.

Identification of regulatory networks of microRNAs and their targets in immunity to Colletotrichum gloeosporioides in tea plant (Camellia sinensis L.)

(Submitter supplied) Anthracnose disease is caused by Colletotrichum gloeosporioides, and is common in leaves of the tea plant Camellia sinensis. MicroRNAs (miRNAs) have been known as key modulators of gene expression in defense responses; however, the role of miRNAs in tea plant during defensive responses to C. gloeosporioides remains unexplored. Six miRNA sequencing data sets and two degradome data sets were generated from C. more...
Organism:
Camellia sinensis
Type:
Non-coding RNA profiling by high throughput sequencing; Other
Platforms:
GPL20107 GPL25554
8 Samples
Download data: TXT
Series
Accession:
GSE119728
ID:
200119728
17.

Genome-Wide Identification and Comprehensive Analysis of Conserved MicroRNAs and Phased small Interfering RNAs in Watermelon

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Citrullus lanatus
Type:
Other; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL23842 GPL20225
15 Samples
Download data: TXT
Series
Accession:
GSE102030
ID:
200102030
18.

Genome-Wide Identification and Comprehensive Analysis of Conserved MicroRNAs and Phased small Interfering RNAs in Watermelon [degradome]

(Submitter supplied) MicroRNAs (miRNAs) are a class of endogenous small non-coding RNAs involved in the post-transcriptional gene regulation and play a critical role in plant growth, development and stress responses. Watermelon (Citrullus lanatus L.) is one of the important agricultural crops worldwide. Here we carried out computational and experimental analysis of miRNAs and phased small interfering RNAs (phasiRNAs) in watermelon by analyzing 14 small RNA profiles from roots, leaves, androecium, flowers, and fruits, and one published small RNA profile of mixed tissues. more...
Organism:
Citrullus lanatus
Type:
Other
Platform:
GPL23842
1 Sample
Download data: TXT
Series
Accession:
GSE102029
ID:
200102029
19.

Genome-Wide Identification and Comprehensive Analysis of Conserved MicroRNAs and Phased small Interfering RNAs in Watermelon [miRNA-Seq]

(Submitter supplied) MicroRNAs (miRNAs) are a class of endogenous small non-coding RNAs involved in the post-transcriptional gene regulation and play a critical role in plant growth, development and stress responses. Watermelon (Citrullus lanatus L.) is one of the important agricultural crops worldwide. Here we carried out computational and experimental analysis of miRNAs and phased small interfering RNAs (phasiRNAs) in watermelon by analyzing 14 small RNA profiles from roots, leaves, androecium, flowers, and fruits, and one published small RNA profile of mixed tissues. more...
Organism:
Citrullus lanatus
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL20225
14 Samples
Download data: TXT
Series
Accession:
GSE102028
ID:
200102028
20.

Temporal expression of small RNAs during rice anther development

(Submitter supplied) Sequencing of sRNA and PARE libraries was performed for tissues collected from developmentally staged young panicles and anthers in rice variety Nongken 58
Organism:
Oryza sativa Japonica Group
Type:
Expression profiling by high throughput sequencing
Platform:
GPL13834
25 Samples
Download data: TXT
Series
Accession:
GSE108238
ID:
200108238
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