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Links from GEO DataSets

Items: 13

1.

An embryonic atrazine exposure results in reproductive dysfunction in adult zebrafish and morphological alterations in their offspring

(Submitter supplied) The herbicide atrazine, a suspected endocrine disrupting chemical (EDC), frequently contaminates potable water supplies. Studies suggest alterations in the neuroendocrine system along the hypothalamus-pituitary-gonadal axis; however, most studies address either developmental, pubertal, or adulthood exposures, with few investigations regarding a developmental origins hypothesis. In this study, zebrafish were exposed to 0, 0.3, 3, or 30 parts per billion (ppb) atrazine through embryogenesis and then allowed to mature with no additional chemical exposure. more...
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL20834
24 Samples
Download data: TXT, XLSX
Series
Accession:
GSE73740
ID:
200073740
2.

Embryonic atrazine exposure elicits neuroendocrine dysfunction in adult male zebrafish

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL20834
48 Samples
Download data: TXT
Series
Accession:
GSE72244
ID:
200072244
3.

Embryonic atrazine exposure elicits neuroendocrine dysfunction in adult male zebrafish (brain)

(Submitter supplied) The developmental origins of health and adult disease (DOHaD) hypothesis states that exposure to various environmental stressors early in life can elicit changes to the genome and epigenome thereby resulting in an increased susceptibility of a disease state during adulthood. Atrazine, a common herbicide used throughout the Midwestern United States for control of weeds on various crops frequently contaminates potable water supplies and is a suspected endocrine disrupting chemical. more...
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL20834
24 Samples
Download data: TXT
Series
Accession:
GSE72243
ID:
200072243
4.

Embryonic atrazine exposure elicits neuroendocrine dysfunction in adult male zebrafish (gonad)

(Submitter supplied) The developmental origins of health and adult disease (DOHaD) hypothesis states that exposure to various environmental stressors early in life can elicit changes to the genome and epigenome thereby resulting in an increased susceptibility of a disease state during adulthood. Atrazine, a common herbicide used throughout the Midwestern United States for control of weeds on various crops frequently contaminates potable water supplies and is a suspected endocrine disrupting chemical. more...
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL20834
24 Samples
Download data: TXT
Series
Accession:
GSE72242
ID:
200072242
5.

Embryonic Atrazine Exposure Causes Behavioral, Transcriptomic, Epigenetic, and Pathological Alterations in Adult Zebrafish Brain [male]

(Submitter supplied) According to the developmental origins of health and disease (DOHaD) hypothesis, exposure to environmental stressors during early development can cause genetic, epigenetic, or functional changes in tissues that increase disease risk later in life. Atrazine (ATZ) is a commonly used pesticide that frequently contaminates rural and urban water sources at levels above the 3 ppb maximum contaminant level set by the US Environmental Protection Agency. more...
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL23074
16 Samples
Download data: TXT, XLSX
Series
Accession:
GSE112504
ID:
200112504
6.

Atrazine Exposure Elicits Copy Number Alterations in the Zebrafish Genome

(Submitter supplied) Atrazine is an agricultural herbicide used throughout the Midwestern United States that frequently contaminates potable water supplies resulting in human exposure. Using the zebrafish model system, an embryonic atrazine exposure was previously reported to decrease spawning rates with an increase in progesterone and ovarian follicular atresia in adult females. In addition, alterations in genes associated with distinct molecular pathways of the endocrine system were observed in brain and gonad tissue of the adult females and males. more...
Organism:
Danio rerio
Type:
Genome variation profiling by genome tiling array
Platform:
GPL22921
9 Samples
Download data: TXT, XLSX
Series
Accession:
GSE93635
ID:
200093635
7.

Embryonic Atrazine Exposure Causes Behavioral, Transcriptomic, Epigenetic, and Pathological Alterations in Adult Zebrafish Brain [female]

(Submitter supplied) According to the developmental origins of health and disease (DOHaD) hypothesis, exposure to environmental stressors during early development can cause genetic, epigenetic, or functional changes in tissues that increase disease risk later in life. Atrazine (ATZ) is a commonly used pesticide that frequently contaminates rural and urban water sources at levels above the 3 ppb maximum contaminant level set by the US Environmental Protection Agency. more...
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL23074
16 Samples
Download data: TXT, XLSX
Series
Accession:
GSE112503
ID:
200112503
8.

Transcriptome Alterations Following Developmental Atrazine Exposure in Zebrafish Are Associated with Disruption of Neuroendocrine and Reproductive System Function, Cell Cycle, and Carcinogenesis

(Submitter supplied) Atrazine, a herbicide commonly applied to agricultural areas and a common contaminant of potable water supplies, is implicated as an endocrine-disrupting chemical (EDC) and potential carcinogen. Studies show that EDCs can cause irreversible changes in tissue formation, decreased reproductive potential, obesity, and cancer. The U.S. Environmental Protection Agency considers an atrazine concentration of ≤ 3 ppb in drinking water safe for consumption. more...
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL10076
12 Samples
Download data: PAIR
Series
Accession:
GSE117398
ID:
200117398
9.

Developmental origins of neurotransmitter and transcriptome alterations in adult female zebrafish exposed to atrazine during embryogenesis

(Submitter supplied) Atrazine is an herbicide applied to agricultural crops and is indicated to be an endocrine disruptor. Atrazine is frequently found to contaminate potable water supplies above the maximum contaminant level of 3 mg/L as defined by the U.S. Environmental Protection Agency. The developmental origin of adult disease hypothesis suggests that toxicant exposure during development can increase the risk of certain diseases during adulthood. more...
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL21560
12 Samples
Download data: PAIR
Series
Accession:
GSE117260
ID:
200117260
10.

Embryonic atrazine exposure alters zebrafish and human miRNAs associated with angiogenesis, cancer, and neurodevelopment

(Submitter supplied) The study of epigenetic mechanisms of gene regulation and the role of these mechanisms in developmental reprogramming of the genome and disease susceptibility has increased in recent years. Molecular epigenetic mechanisms regulating gene expression include DNA methylation, histone modifications, and small non-coding RNAs (e.g., microRNAs). MicroRNAs (miRNAs) are short, single-stranded RNA that regulate post-transcriptional control of the translation of mRNA. more...
Organism:
Homo sapiens; Danio rerio
Type:
Non-coding RNA profiling by array
Platform:
GPL21545
15 Samples
Download data: TXT, XLSX
Series
Accession:
GSE78805
ID:
200078805
11.

Mitochondrial dysfunction, disruption of F-actin polymerization, and transcriptomic alterations in zebrafish larvae exposed to trichloroethylene

(Submitter supplied) Trichloroethylene (TCE) is primarily used as an industrial degreasing agent and has been in use since the 1940s. TCE is released into the soil, surface, and groundwater. From an environmental and regulatory standpoint more than half of Superfund hazardous waste sites on the National Priority List are contaminated with TCE. Occupational exposure to TCE occurs primarily via inhalation, while environmental TCE exposure also occurs through ingestion of contaminated drinking water. more...
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL20834
8 Samples
Download data: TXT, XLSX
Series
Accession:
GSE72918
ID:
200072918
12.

Effects of maternal Cd on the female reproductive functions, gametes development and genes expression of zebrafish

(Submitter supplied) The impacts of maternal Cd on zebrafish from female to embryo which included fecundity, gametes development, growth, other reproductive functions, and gene expression of 5hpf embryo were up and down regulated after female pretreated with Cd. The mating rate decreased by 30 %. It can be observed in growth delay during 6-somite stage. The ceratohyal head angle of larvae is widest upon 35.6 μM maternal Cd treatment and it was showed a dose response. more...
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL5182
3 Samples
Download data: GPR
Series
Accession:
GSE20926
ID:
200020926
13.

Embryonic exposure to an aqueous coal dust extract results in gene expression alterations associated with development and function of connective tissue and the hematological system in zebrafish

(Submitter supplied) Coal is a major energy source that generates diverse environmental impacts through its production, primarily by the release of coal dust particles. An aqueous coal dust extract was obtained from a mineral sample taken from one of the largest coal mines in Colombia (La Loma, Cesar), trace elements by ICP/MS were measured, and its toxicity evaluated using the zebrafish (Danio rerio) vertebrate model. In this study, zebrafish embryos were exposed to different concentrations of aqueous coal extract (0, 0.1, 1, 10, 100 and 1000 parts per million (ppm; μg/mL) to establish acute toxicity, as well as morphological and transcriptome alterations. Trace elements within the coal extract yielding the highest concentrations included Sr, Zn, Ba, As, Cu, Se, Li, Ni, Sb, Rb, Co, and Cr. In addition, Cd and Pb were found in lower concentrations. No significant difference in mortality was observed with survival near 90% in all treatments. A significant decrease in rate of hatching was observed in the 0.1 and 1000 ppm treatment groups at 72 hpf. Furthermore, no significant differences in total body length, head length, or head diameter was observed in any of the treatment groups. Transcriptomic results of zebrafish larvae revealed alterations in 77, 61, and 1,376 genes in the 1, 10, and 100 ppm treatments, respectively. Gene ontology analysis revealed gene alterations associated with hematological system development and function, tissue morphology and development, connective tissue development and function, and embryonic development. Overall, these findings are the first to identify gene expression alterations in response to a developmental aqueous coal dust residue from coal mining.
Organism:
Danio rerio
Type:
Expression profiling by array
Platform:
GPL23074
12 Samples
Download data: TXT, XLSX
Series
Accession:
GSE94997
ID:
200094997
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