GSM434406[Accession] - GEO DataSets

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Items: 4

Select item 2000174361.

Oligotrophic growth of the extremely thermophilic bacterium C. saccharolyticus on simple and complex sugars

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Caldicellulosiruptor saccharolyticus

Type:: Expression profiling by array

Platform:: GPL6681
15 Samples

Download data: TXT

Series

Accession:: GSE17436

ID:: 200017436

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000174272.

Csac growth on model substrates found in lignocellulose

(Submitter supplied) The co-utilization of hexoses and pentoses derived from lignocellulose is an attractive trait for in microorganisms considered for consolidated biomass processing to biofuels. This issue was examined for the H2-producing, extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus growing on oligosaccharides (composed of glucose and xylose) compared to monosaccharides. Based on the whole-genome transcriptional response analysis and comparative genomics, carbohydrate specificities for transport systems could be proposed for a number of the 24 putative carbohydrate ATP-binding cassette (ABC) transporters in the C. more...

Organism:: Caldicellulosiruptor saccharolyticus

Type:: Expression profiling by array

Platform:: GPL6681
5 Samples

Download data: TXT

Series

Accession:: GSE17427

ID:: 200017427

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000066813.

NCSU_Caldicellulosiruptor saccharolyticus_3K array_version 1

(Submitter supplied) A DNA microarray was designed and constructed based on 2793 protein-coding sequences in the C. saccharolyticus genome obtained from the Department on Energy's Joint Genomes Institute (http://genome.ornl.gov/microbial/csac). OligoArray 2.0 (Rouillard, 2003) was used to generate one 60-mer oligonucleotide probe sequence for each open reading frame. The probes were synthesized (Integrated DNA Technologies, IA), re-suspended in 50% DMSO, and printed onto Ultragap microarray slides (Corning, NY) using a QArrayMini arrayer (Genetix, UK). more...