GEO DataSets

(Submitter supplied) Phylogenetic, microbiological and comparative genomic analysis was used to examine the diversity among members of the genus Caldicellulosiruptor with an eye towards the capacity of these extremely thermophilic bacteria for degrading the complex carbohydrate content of plant biomass. Seven species from this genus (C. saccharolyticus, C. bescii (formerly Anaerocellum thermophilum), C. hydrothermalis, C. more...

Organism:

Caldicellulosiruptor bescii; Caldicellulosiruptor kronotskyensis; Caldicellulosiruptor saccharolyticus; Caldicellulosiruptor hydrothermalis; Caldicellulosiruptor acetigenus; Caldicellulosiruptor owensensis

Type:

Genome variation profiling by array

Platform:

GPL6681

6 Samples

Download data: CSV

(Submitter supplied) A DNA microarray was designed and constructed based on 2793 protein-coding sequences in the C. saccharolyticus genome obtained from the Department on Energy's Joint Genomes Institute (http://genome.ornl.gov/microbial/csac). OligoArray 2.0 (Rouillard, 2003) was used to generate one 60-mer oligonucleotide probe sequence for each open reading frame. The probes were synthesized (Integrated DNA Technologies, IA), re-suspended in 50% DMSO, and printed onto Ultragap microarray slides (Corning, NY) using a QArrayMini arrayer (Genetix, UK). more...

Organism:

Caldicellulosiruptor saccharolyticus

9 Series

42 Samples

Download data