GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Homo sapiens

Type:

SNP genotyping by SNP array; Genome variation profiling by SNP array; Genome variation profiling by genome tiling array

87 related Platforms

100 Samples

Download data: CEL, CHP, GFF, PAIR, TXT

(Submitter supplied) The ideal genome sequence for medical interpretation is complete and diploid, capturing the full spectrum of genetic variation. Toward this end, there has been progress in discovery of single nucleotide polymorphism (SNP) and small (<10bp) insertion/deletions (indels), but annotation of larger structural variation (SV) including copy number variation (CNV) has been less comprehensive, even with available diploid sequence assemblies. more...

Organism:

Homo sapiens

Type:

Genome variation profiling by genome tiling array

24 related Platforms

24 Samples

Download data: GFF, TXT

(Submitter supplied) Discovery of common Asian copy number variants using a novel integrated high-resolution array CGH and massively parallel DNA sequencing. We attempted to discover common Asian copy number variants (CNVs) from the DNA of 30 Asian women (10 Korean, 10 CHB (HapMap), 10 JPT (HapMap)) using a custom-designed 24M-oligonucleotide Agilent platform (1.1M X 24 slides). The reference sample for aCGH was NA10851 (HapMap CEPH). more...

Organism:

Homo sapiens

Type:

Genome variation profiling by genome tiling array

24 related Platforms

792 Samples

Download data: TXT