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dbVar

Database of genomic structural variation

nsv976514

Organism: Homo sapiens

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:6,237

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 248 SVs from 54 studies. See in: genome view

Remapped(Score: Perfect):90,835,260-90,841,496

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv976514	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	90,835,260	90,841,496
nsv976514	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	90,568,428	90,574,664
nsv976514	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	90,208,076	90,214,312

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2760349	deletion	HGDP01284	Sequencing	Read depth	0	17,196
nssv2760582	deletion	HGDP00456	Sequencing	Read depth	1	17,189
nssv2760828	deletion	HGDP01029	Sequencing	Read depth	0	17,182

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2760349	Remapped	Perfect	NC_000011.10:g.(?_ 90835260)_(9084149 6_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	90,835,260	90,841,496
nssv2760582	Remapped	Perfect	NC_000011.10:g.(?_ 90835260)_(9084149 6_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	90,835,260	90,841,496
nssv2760828	Remapped	Perfect	NC_000011.10:g.(?_ 90835260)_(9084149 6_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	90,835,260	90,841,496
nssv2760349	Remapped	Perfect	NC_000011.9:g.(?_9 0568428)_(90574664 _?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	90,568,428	90,574,664
nssv2760582	Remapped	Perfect	NC_000011.9:g.(?_9 0568428)_(90574664 _?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	90,568,428	90,574,664
nssv2760828	Remapped	Perfect	NC_000011.9:g.(?_9 0568428)_(90574664 _?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	90,568,428	90,574,664
nssv2760349	Submitted genomic		NC_000011.8:g.(?_9 0208076)_(90214312 _?)del	NCBI36 (hg18)		NC_000011.8	Chr11	90,208,076	90,214,312
nssv2760582	Submitted genomic		NC_000011.8:g.(?_9 0208076)_(90214312 _?)del	NCBI36 (hg18)		NC_000011.8	Chr11	90,208,076	90,214,312
nssv2760828	Submitted genomic		NC_000011.8:g.(?_9 0208076)_(90214312 _?)del	NCBI36 (hg18)		NC_000011.8	Chr11	90,208,076	90,214,312

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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