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dbVar

Database of genomic structural variation

nsv960212

Organism: Homo sapiens

Study:nstd82 (Sudmant et al. 2013)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:13,516

Publication(s):Sudmant et al. 2013

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 342 SVs from 62 studies. See in: genome view

Remapped(Score: Perfect):80,013,619-80,027,134

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv960212	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000017.11	Chr17	80,013,619	80,027,134
nsv960212	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000017.10	Chr17	77,987,418	78,000,933
nsv960212	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000017.9	Chr17	75,602,013	75,615,528

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2759737	deletion	HGDP00456	Sequencing	Read depth	1	17,189
nssv2762910	deletion	HGDP00927	Sequencing	Read depth	1	17,185
nssv2766467	deletion	HGDP00778	Sequencing	Read depth	1	17,185

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2759737	Remapped	Perfect	NC_000017.11:g.(?_ 80013619)_(8002713 4_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	80,013,619	80,027,134
nssv2762910	Remapped	Perfect	NC_000017.11:g.(?_ 80013619)_(8002713 4_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	80,013,619	80,027,134
nssv2766467	Remapped	Perfect	NC_000017.11:g.(?_ 80013619)_(8002713 4_?)del	GRCh38.p12	First Pass	NC_000017.11	Chr17	80,013,619	80,027,134
nssv2759737	Remapped	Perfect	NC_000017.10:g.(?_ 77987418)_(7800093 3_?)del	GRCh37.p13	First Pass	NC_000017.10	Chr17	77,987,418	78,000,933
nssv2762910	Remapped	Perfect	NC_000017.10:g.(?_ 77987418)_(7800093 3_?)del	GRCh37.p13	First Pass	NC_000017.10	Chr17	77,987,418	78,000,933
nssv2766467	Remapped	Perfect	NC_000017.10:g.(?_ 77987418)_(7800093 3_?)del	GRCh37.p13	First Pass	NC_000017.10	Chr17	77,987,418	78,000,933
nssv2759737	Submitted genomic		NC_000017.9:g.(?_7 5602013)_(75615528 _?)del	NCBI36 (hg18)		NC_000017.9	Chr17	75,602,013	75,615,528
nssv2762910	Submitted genomic		NC_000017.9:g.(?_7 5602013)_(75615528 _?)del	NCBI36 (hg18)		NC_000017.9	Chr17	75,602,013	75,615,528
nssv2766467	Submitted genomic		NC_000017.9:g.(?_7 5602013)_(75615528 _?)del	NCBI36 (hg18)		NC_000017.9	Chr17	75,602,013	75,615,528

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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