nsv7054417
- Organism: Homo sapiens
- Study:nstd229 (Jun et al. 2023)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,226,165
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4990 SVs from 113 studies. See in: genome view
Overlapping variant regions from other studies: 4650 SVs from 113 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7054417 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000002.12 | Chr2 | 89,002,330 | 90,228,494 | ||
| nsv7054417 | Remapped | Pass | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 89,301,827 | 90,267,360 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18769529 | inversion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18769529 | Submitted genomic | NC_000002.12:g.890 02330_90228494inv | GRCh38 (hg38) | NC_000002.12 | Chr2 | 89,002,330 | 90,228,494 | ||
| nssv18769529 | Remapped | Pass | NC_000002.11:g.893 01827_90267360inv | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 89,301,827 | 90,267,360 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18769529 | 0.131 | 32522 | 250540 |