nstd229 (Jun et al. 2023)
- Organism:
- Human
- Study Type:
- Collection
- Submitter:
- Fritz Sedlazeck
- Description:
- This is a SV call set across TOPMed of 138,134 WGS data sets from various ethnicities. See Variant Summary counts for nstd229 in dbVar Variant Summary.
Detailed Information: Download 376296 Variant Regions, Download 376298 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Submitted: GRCh38 (hg38)
Remapped: GRCh37.p13 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 26,161 | 26,161 | Submitted | NC_000001.11 |
| NC_000002.12 | Chr2 | 30,273 | 30,273 | Submitted | NC_000002.12 |
| NC_000003.12 | Chr3 | 25,266 | 25,266 | Submitted | NC_000003.12 |
| NC_000004.12 | Chr4 | 25,821 | 25,822 | Submitted | NC_000004.12 |
| NC_000005.10 | Chr5 | 23,874 | 23,874 | Submitted | NC_000005.10 |
| NC_000006.12 | Chr6 | 23,044 | 23,044 | Submitted | NC_000006.12 |
| NC_000007.14 | Chr7 | 23,157 | 23,157 | Submitted | NC_000007.14 |
| NC_000008.11 | Chr8 | 19,890 | 19,890 | Submitted | NC_000008.11 |
| NC_000009.12 | Chr9 | 16,850 | 16,850 | Submitted | NC_000009.12 |
| NC_000010.11 | Chr10 | 17,170 | 17,170 | Submitted | NC_000010.11 |
| NC_000011.10 | Chr11 | 17,633 | 17,633 | Submitted | NC_000011.10 |
| NC_000012.12 | Chr12 | 16,587 | 16,587 | Submitted | NC_000012.12 |
| NC_000013.11 | Chr13 | 13,527 | 13,527 | Submitted | NC_000013.11 |
| NC_000014.9 | Chr14 | 11,483 | 11,483 | Submitted | NC_000014.9 |
| NC_000015.10 | Chr15 | 9,322 | 9,323 | Submitted | NC_000015.10 |
| NC_000016.10 | Chr16 | 11,492 | 11,492 | Submitted | NC_000016.10 |
| NC_000017.11 | Chr17 | 9,583 | 9,583 | Submitted | NC_000017.11 |
| NC_000018.10 | Chr18 | 10,116 | 10,116 | Submitted | NC_000018.10 |
| NC_000019.10 | Chr19 | 7,979 | 7,979 | Submitted | NC_000019.10 |
| NC_000020.11 | Chr20 | 8,791 | 8,791 | Submitted | NC_000020.11 |
| NC_000021.9 | Chr21 | 4,804 | 4,804 | Submitted | NC_000021.9 |
| NC_000022.11 | Chr22 | 4,477 | 4,477 | Submitted | NC_000022.11 |
| NC_000023.11 | ChrX | 18,996 | 18,996 | Submitted | NC_000023.11 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 26,085 | 26,085 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 30,276 | 30,276 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 25,244 | 25,244 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 25,814 | 25,815 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 23,883 | 23,883 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 22,868 | 22,868 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 23,042 | 23,042 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 19,746 | 19,746 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 16,787 | 16,787 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 17,073 | 17,073 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 17,606 | 17,606 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 16,584 | 16,584 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 13,513 | 13,513 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 11,252 | 11,252 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 9,315 | 9,316 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 11,408 | 11,408 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 9,409 | 9,409 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 10,115 | 10,115 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 7,760 | 7,760 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 8,699 | 8,699 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 4,725 | 4,725 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 4,442 | 4,442 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 18,949 | 18,949 | Remapped | NC_000023.10 |
| NC_000024.9 | ChrY | 5 | 5 | Remapped | NC_000024.9 |
| NT_167227.1 | Unplaced|NT_167227.1 | 2 | 2 | Remapped | NT_167227.1 |
| NT_167226.1 | Unplaced|NT_167226.1 | 1 | 1 | Remapped | NT_167226.1 |
| NT_167211.1 | Unplaced|NT_167211.1 | 1 | 1 | Remapped | NT_167211.1 |
| NT_167223.1 | Unplaced|NT_167223.1 | 1 | 1 | Remapped | NT_167223.1 |
| NT_167207.1 | Chr1|NT_167207.1 | 5 | 5 | Remapped | NT_167207.1 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 11 | 11 | Remapped | NW_003315903.1 |
| NW_003315904.1 | Chr1|NW_003315904.1 | 14 | 14 | Remapped | NW_003315904.1 |
| NW_003571030.1 | Chr1|NW_003571030.1 | 34 | 34 | Remapped | NW_003571030.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 278 | 278 | Remapped | NW_003871055.3 |
| NW_003871056.3 | Chr1|NW_003871056.3 | 35 | 35 | Remapped | NW_003871056.3 |
| NW_003871057.1 | Chr1|NW_003871057.1 | 52 | 52 | Remapped | NW_003871057.1 |
| NW_004070863.1 | Chr1|NW_004070863.1 | 3 | 3 | Remapped | NW_004070863.1 |
| NW_004070864.2 | Chr1|NW_004070864.2 | 2 | 2 | Remapped | NW_004070864.2 |
| NW_004070865.1 | Chr1|NW_004070865.1 | 7 | 7 | Remapped | NW_004070865.1 |
| NW_004504299.1 | Chr2|NW_004504299.1 | 67 | 67 | Remapped | NW_004504299.1 |
| NW_003315910.1 | Chr3|NW_003315910.1 | 12 | 12 | Remapped | NW_003315910.1 |
| NW_003315911.1 | Chr3|NW_003315911.1 | 9 | 9 | Remapped | NW_003315911.1 |
| NW_003315912.1 | Chr3|NW_003315912.1 | 7 | 7 | Remapped | NW_003315912.1 |
| NW_003871058.1 | Chr3|NW_003871058.1 | 103 | 103 | Remapped | NW_003871058.1 |
| NW_003871059.1 | Chr3|NW_003871059.1 | 12 | 12 | Remapped | NW_003871059.1 |
| NW_003871060.1 | Chr3|NW_003871060.1 | 5 | 5 | Remapped | NW_003871060.1 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 27 | 27 | Remapped | NW_004775426.1 |
| NT_113885.1 | Chr4|NT_113885.1 | 4 | 4 | Remapped | NT_113885.1 |
| NW_003315916.1 | Chr4|NW_003315916.1 | 9 | 9 | Remapped | NW_003315916.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 22 | 22 | Remapped | NW_003571034.1 |
| NW_003571035.1 | Chr4|NW_003571035.1 | 21 | 21 | Remapped | NW_003571035.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 140 | 140 | Remapped | NW_004775427.1 |
| NW_003871061.1 | Chr5|NW_003871061.1 | 16 | 16 | Remapped | NW_003871061.1 |
| NW_004775428.1 | Chr5|NW_004775428.1 | 91 | 91 | Remapped | NW_004775428.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 19 | 19 | Remapped | NT_167246.1 |
| NT_167248.1 | Chr6|NT_167248.1 | 19 | 19 | Remapped | NT_167248.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 2 | 2 | Remapped | NT_167249.1 |
| NW_003871062.1 | Chr6|NW_003871062.1 | 41 | 41 | Remapped | NW_003871062.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 18 | 18 | Remapped | NW_004070866.1 |
| NW_004166862.1 | Chr6|NW_004166862.1 | 1 | 1 | Remapped | NW_004166862.1 |
| NW_004504300.1 | Chr6|NW_004504300.1 | 80 | 80 | Remapped | NW_004504300.1 |
| NW_004775429.1 | Chr6|NW_004775429.1 | 14 | 14 | Remapped | NW_004775429.1 |
| NW_003571037.1 | Chr7|NW_003571037.1 | 52 | 52 | Remapped | NW_003571037.1 |
| NW_003571038.1 | Chr7|NW_003571038.1 | 30 | 30 | Remapped | NW_003571038.1 |
| NW_003571039.1 | Chr7|NW_003571039.1 | 12 | 12 | Remapped | NW_003571039.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 79 | 79 | Remapped | NW_003571040.1 |
| NW_003571041.1 | Chr7|NW_003571041.1 | 41 | 41 | Remapped | NW_003571041.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 341 | 341 | Remapped | NW_003871064.1 |
| NW_003871065.1 | Chr7|NW_003871065.1 | 73 | 73 | Remapped | NW_003871065.1 |
| NW_004775430.1 | Chr7|NW_004775430.1 | 18 | 18 | Remapped | NW_004775430.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 66 | 66 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 35 | 35 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 114 | 114 | Remapped | NW_003571042.1 |
| NW_003871066.2 | Chr8|NW_003871066.2 | 20 | 20 | Remapped | NW_003871066.2 |
| NW_004775431.1 | Chr8|NW_004775431.1 | 30 | 30 | Remapped | NW_004775431.1 |
| NT_113916.2 | Chr9|NT_113916.2 | 2 | 2 | Remapped | NT_113916.2 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 47 | 47 | Remapped | NW_003315925.1 |
| NW_003315926.1 | Chr9|NW_003315926.1 | 16 | 16 | Remapped | NW_003315926.1 |
| NW_003315927.1 | Chr9|NW_003315927.1 | 6 | 6 | Remapped | NW_003315927.1 |
| NW_003871067.1 | Chr9|NW_003871067.1 | 11 | 11 | Remapped | NW_003871067.1 |
| NW_004070867.1 | Chr9|NW_004070867.1 | 6 | 6 | Remapped | NW_004070867.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 28 | 28 | Remapped | NW_004070868.1 |
| NW_004070869.1 | Chr9|NW_004070869.1 | 29 | 29 | Remapped | NW_004070869.1 |
| NW_004504301.1 | Chr9|NW_004504301.1 | 16 | 16 | Remapped | NW_004504301.1 |
| NW_003315932.1 | Chr10|NW_003315932.1 | 49 | 49 | Remapped | NW_003315932.1 |
| NW_003315933.1 | Chr10|NW_003315933.1 | 13 | 13 | Remapped | NW_003315933.1 |
| NW_003571043.1 | Chr10|NW_003571043.1 | 46 | 46 | Remapped | NW_003571043.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 116 | 116 | Remapped | NW_003871068.1 |
| NW_003871069.1 | Chr10|NW_003871069.1 | 21 | 21 | Remapped | NW_003871069.1 |
| NW_003871070.1 | Chr10|NW_003871070.1 | 6 | 6 | Remapped | NW_003871070.1 |
| NW_003871071.1 | Chr10|NW_003871071.1 | 78 | 78 | Remapped | NW_003871071.1 |
| NW_004070870.1 | Chr10|NW_004070870.1 | 7 | 7 | Remapped | NW_004070870.1 |
| NW_004504302.1 | Chr10|NW_004504302.1 | 18 | 18 | Remapped | NW_004504302.1 |
| NW_004775432.1 | Chr10|NW_004775432.1 | 116 | 116 | Remapped | NW_004775432.1 |
| NT_113921.2 | Chr11|NT_113921.2 | 2 | 2 | Remapped | NT_113921.2 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 43 | 43 | Remapped | NW_003571045.1 |
| NW_003571046.1 | Chr11|NW_003571046.1 | 48 | 48 | Remapped | NW_003571046.1 |
| NW_003871072.2 | Chr11|NW_003871072.2 | 46 | 46 | Remapped | NW_003871072.2 |
| NW_003871075.1 | Chr11|NW_003871075.1 | 45 | 45 | Remapped | NW_003871075.1 |
| NW_003871076.1 | Chr11|NW_003871076.1 | 23 | 23 | Remapped | NW_003871076.1 |
| NW_003871077.1 | Chr11|NW_003871077.1 | 17 | 17 | Remapped | NW_003871077.1 |
| NW_003871078.1 | Chr11|NW_003871078.1 | 64 | 64 | Remapped | NW_003871078.1 |
| NW_003871079.1 | Chr11|NW_003871079.1 | 32 | 32 | Remapped | NW_003871079.1 |
| NW_003871080.1 | Chr11|NW_003871080.1 | 24 | 24 | Remapped | NW_003871080.1 |
| NW_003871081.1 | Chr11|NW_003871081.1 | 14 | 14 | Remapped | NW_003871081.1 |
| NW_003871082.1 | Chr11|NW_003871082.1 | 23 | 23 | Remapped | NW_003871082.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 102 | 102 | Remapped | NW_004070871.1 |
| NW_003315937.1 | Chr12|NW_003315937.1 | 39 | 39 | Remapped | NW_003315937.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 34 | 34 | Remapped | NW_003571048.1 |
| NW_003871083.2 | Chr12|NW_003871083.2 | 34 | 34 | Remapped | NW_003871083.2 |
| NW_004504303.2 | Chr12|NW_004504303.2 | 44 | 44 | Remapped | NW_004504303.2 |
| NW_003571051.1 | Chr13|NW_003571051.1 | 1 | 1 | Remapped | NW_003571051.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 264 | 264 | Remapped | NW_004166863.1 |
| NW_003871084.1 | Chr15|NW_003871084.1 | 29 | 29 | Remapped | NW_003871084.1 |
| NW_003871085.1 | Chr16|NW_003871085.1 | 7 | 7 | Remapped | NW_003871085.1 |
| NT_113943.1 | Chr17|NT_113943.1 | 5 | 5 | Remapped | NT_113943.1 |
| NW_003315947.1 | Chr17|NW_003315947.1 | 54 | 54 | Remapped | NW_003315947.1 |
| NW_003315948.2 | Chr17|NW_003315948.2 | 6 | 6 | Remapped | NW_003315948.2 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 18 | 18 | Remapped | NW_003315949.1 |
| NW_003315950.2 | Chr17|NW_003315950.2 | 55 | 55 | Remapped | NW_003315950.2 |
| NW_003315951.1 | Chr17|NW_003315951.1 | 12 | 12 | Remapped | NW_003315951.1 |
| NW_003315952.2 | Chr17|NW_003315952.2 | 1 | 1 | Remapped | NW_003315952.2 |
| NW_003315953.1 | Chr17|NW_003315953.1 | 1 | 1 | Remapped | NW_003315953.1 |
| NW_003571052.1 | Chr17|NW_003571052.1 | 40 | 40 | Remapped | NW_003571052.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 39 | 39 | Remapped | NW_003871087.1 |
| NW_003871088.1 | Chr17|NW_003871088.1 | 56 | 56 | Remapped | NW_003871088.1 |
| NW_003871089.1 | Chr17|NW_003871089.1 | 48 | 48 | Remapped | NW_003871089.1 |
| NW_003871090.1 | Chr17|NW_003871090.1 | 19 | 19 | Remapped | NW_003871090.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 58 | 58 | Remapped | NW_004070872.2 |
| NW_004166864.2 | Chr17|NW_004166864.2 | 18 | 18 | Remapped | NW_004166864.2 |
| NW_004775433.1 | Chr17|NW_004775433.1 | 5 | 5 | Remapped | NW_004775433.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 148 | 148 | Remapped | NW_003571053.2 |
| NW_003871094.1 | Chr19|NW_003871094.1 | 22 | 22 | Remapped | NW_003871094.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 195 | 195 | Remapped | NW_004166865.1 |
| NW_004775434.1 | Chr19|NW_004775434.1 | 74 | 74 | Remapped | NW_004775434.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 41 | 41 | Remapped | NW_003571063.2 |
| NW_003871095.1 | Chr20|NW_003871095.1 | 11 | 11 | Remapped | NW_003871095.1 |
| NW_004504304.1 | Chr20|NW_004504304.1 | 44 | 44 | Remapped | NW_004504304.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 30 | 30 | Remapped | NW_003315968.1 |
| NW_003315970.1 | Chr21|NW_003315970.1 | 1 | 1 | Remapped | NW_003315970.1 |
| NW_004775435.1 | Chr21|NW_004775435.1 | 49 | 49 | Remapped | NW_004775435.1 |
| NT_113961.1 | Chr22|NT_113961.1 | 16 | 16 | Remapped | NT_113961.1 |
| NW_003871096.1 | Chr22|NW_003871096.1 | 33 | 33 | Remapped | NW_003871096.1 |
| NW_004070876.1 | Chr22|NW_004070876.1 | 3 | 3 | Remapped | NW_004070876.1 |
| NT_167212.1 | Chr22|NT_167212.1 | 1 | 1 | Remapped | NT_167212.1 |
| NT_167235.1 | Chr22|NT_167235.1 | 1 | 1 | Remapped | NT_167235.1 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 96 | 96 | Remapped | NW_003871098.1 |
| NW_003871099.1 | ChrX|NW_003871099.1 | 62 | 62 | Remapped | NW_003871099.1 |
| NW_003871100.1 | ChrX|NW_003871100.1 | 230 | 230 | Remapped | NW_003871100.1 |
| NW_003871101.3 | ChrX|NW_003871101.3 | 77 | 77 | Remapped | NW_003871101.3 |
| NW_003871102.1 | ChrX|NW_003871102.1 | 2 | 2 | Remapped | NW_003871102.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 739 | 739 | Remapped | NW_003871103.3 |
| NW_004070877.1 | ChrX|NW_004070877.1 | 435 | 435 | Remapped | NW_004070877.1 |
| NW_004070878.1 | ChrX|NW_004070878.1 | 142 | 142 | Remapped | NW_004070878.1 |
| NW_004070879.1 | ChrX|NW_004070879.1 | 31 | 31 | Remapped | NW_004070879.1 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 261 | 261 | Remapped | NW_004070880.2 |
| NW_004070881.1 | ChrX|NW_004070881.1 | 18 | 18 | Remapped | NW_004070881.1 |
| NW_004070882.1 | ChrX|NW_004070882.1 | 65 | 65 | Remapped | NW_004070882.1 |
| NW_004070883.1 | ChrX|NW_004070883.1 | 41 | 41 | Remapped | NW_004070883.1 |
| NW_004070884.1 | ChrX|NW_004070884.1 | 13 | 13 | Remapped | NW_004070884.1 |
| NW_004070885.1 | ChrX|NW_004070885.1 | 45 | 45 | Remapped | NW_004070885.1 |
| NW_004070886.1 | ChrX|NW_004070886.1 | 35 | 35 | Remapped | NW_004070886.1 |
| NW_004070887.1 | ChrX|NW_004070887.1 | 128 | 128 | Remapped | NW_004070887.1 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 102 | 102 | Remapped | NW_004070888.1 |
| NW_004070889.1 | ChrX|NW_004070889.1 | 137 | 137 | Remapped | NW_004070889.1 |
| NW_004070890.2 | ChrX|NW_004070890.2 | 903 | 903 | Remapped | NW_004070890.2 |
| NW_004070891.1 | ChrX|NW_004070891.1 | 140 | 140 | Remapped | NW_004070891.1 |
| NW_004070892.1 | ChrX|NW_004070892.1 | 62 | 62 | Remapped | NW_004070892.1 |
| NW_004070893.1 | ChrX|NW_004070893.1 | 28 | 28 | Remapped | NW_004070893.1 |
| NW_004166866.1 | ChrX|NW_004166866.1 | 41 | 41 | Remapped | NW_004166866.1 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.11 | Chr1 | 26,161 | 25,451 | 279 | 52 | 14 | 365 | 26,161 | 25,451 | 279 | 52 | 14 | 365 |
| NC_000002.12 | Chr2 | 30,273 | 29,715 | 408 | 63 | 16 | 71 | 30,273 | 29,715 | 408 | 63 | 16 | 71 |
| NC_000003.12 | Chr3 | 25,266 | 24,745 | 304 | 52 | 6 | 159 | 25,266 | 24,745 | 304 | 52 | 6 | 159 |
| NC_000004.12 | Chr4 | 25,821 | 25,509 | 107 | 17 | 7 | 181 | 25,822 | 25,510 | 107 | 17 | 7 | 181 |
| NC_000005.10 | Chr5 | 23,874 | 23,608 | 143 | 15 | 1 | 107 | 23,874 | 23,608 | 143 | 15 | 1 | 107 |
| NC_000006.12 | Chr6 | 23,044 | 22,441 | 255 | 69 | 135 | 144 | 23,044 | 22,441 | 255 | 69 | 135 | 144 |
| NC_000007.14 | Chr7 | 23,157 | 22,131 | 352 | 77 | 35 | 562 | 23,157 | 22,131 | 352 | 77 | 35 | 562 |
| NC_000008.11 | Chr8 | 19,890 | 19,396 | 298 | 57 | 9 | 130 | 19,890 | 19,396 | 298 | 57 | 9 | 130 |
| NC_000009.12 | Chr9 | 16,850 | 16,609 | 40 | 30 | 30 | 141 | 16,850 | 16,609 | 40 | 30 | 30 | 141 |
| NC_000010.11 | Chr10 | 17,170 | 16,594 | 95 | 50 | 28 | 403 | 17,170 | 16,594 | 95 | 50 | 28 | 403 |
| NC_000011.10 | Chr11 | 17,633 | 16,851 | 239 | 67 | 10 | 466 | 17,633 | 16,851 | 239 | 67 | 10 | 466 |
| NC_000012.12 | Chr12 | 16,587 | 16,344 | 67 | 26 | 1 | 149 | 16,587 | 16,344 | 67 | 26 | 1 | 149 |
| NC_000013.11 | Chr13 | 13,527 | 13,369 | 91 | 50 | 17 | 0 | 13,527 | 13,369 | 91 | 50 | 17 | 0 |
| NC_000014.9 | Chr14 | 11,483 | 11,174 | 200 | 70 | 3 | 36 | 11,483 | 11,174 | 200 | 70 | 3 | 36 |
| NC_000015.10 | Chr15 | 9,322 | 9,173 | 86 | 27 | 7 | 29 | 9,323 | 9,174 | 86 | 27 | 7 | 29 |
| NC_000016.10 | Chr16 | 11,492 | 11,263 | 105 | 37 | 79 | 8 | 11,492 | 11,263 | 105 | 37 | 79 | 8 |
| NC_000017.11 | Chr17 | 9,583 | 9,019 | 211 | 72 | 9 | 272 | 9,583 | 9,019 | 211 | 72 | 9 | 272 |
| NC_000018.10 | Chr18 | 10,116 | 9,990 | 109 | 16 | 1 | 0 | 10,116 | 9,990 | 109 | 16 | 1 | 0 |
| NC_000019.10 | Chr19 | 7,979 | 7,529 | 175 | 41 | 7 | 227 | 7,979 | 7,529 | 175 | 41 | 7 | 227 |
| NC_000020.11 | Chr20 | 8,791 | 8,500 | 146 | 34 | 35 | 76 | 8,791 | 8,500 | 146 | 34 | 35 | 76 |
| NC_000021.9 | Chr21 | 4,804 | 4,301 | 373 | 31 | 46 | 53 | 4,804 | 4,301 | 373 | 31 | 46 | 53 |
| NC_000022.11 | Chr22 | 4,477 | 4,033 | 359 | 25 | 19 | 41 | 4,477 | 4,033 | 359 | 25 | 19 | 41 |
| NC_000023.11 | ChrX | 18,996 | 14,661 | 444 | 87 | 9 | 3,795 | 18,996 | 14,661 | 444 | 87 | 9 | 3,795 |
Samplesets
Number of Samplesets: 1
- Name:
- Topmed freeze
- Description:
- This is a collection of 138134 samples from the TOPMed cohort where we called SV across individuals
- Size:
- 138,134 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
Experimental Details
| Experiment ID | Type | Method | Analysis | Number of Variant Calls |
|---|---|---|---|---|
| 1 | Discovery | Sequencing | Split read and paired-end mapping | 376,298 |