nsv7042770
- Organism: Homo sapiens
- Study:nstd229 (Jun et al. 2023)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:6,375
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 85 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 82 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 5 SVs from 5 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv7042770 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000005.10 | Chr5 | 140,976,885 | 140,983,259 | ||
| nsv7042770 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000005.9 | Chr5 | 140,356,470 | 140,362,844 |
| nsv7042770 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004775428.1 | Chr5|NW_00 4775428.1 | 212,061 | 218,435 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv18774496 | inversion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18774496 | Submitted genomic | NC_000005.10:g.140 976885_140983259in v | GRCh38 (hg38) | NC_000005.10 | Chr5 | 140,976,885 | 140,983,259 | ||
| nssv18774496 | Remapped | Perfect | NW_004775428.1:g.2 12061_218435inv | GRCh37.p13 | First Pass | NW_004775428.1 | Chr5|NW_00 4775428.1 | 212,061 | 218,435 |
| nssv18774496 | Remapped | Perfect | NC_000005.9:g.1403 56470_140362844inv | GRCh37.p13 | Second Pass | NC_000005.9 | Chr5 | 140,356,470 | 140,362,844 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv18774496 | 7e-06 | 2 | 276012 |