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dbVar

Database of genomic structural variation

nsv6878772

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:449

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 101 SVs from 31 studies. See in: genome view

Submitted genomic52,308,977-52,309,425

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6878772	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000010.11	Chr10	52,308,977	52,309,425
nsv6878772	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	54,068,737	54,069,185

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18337010	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18337010	Submitted genomic		NC_000010.11:g.523 08977_52309425del	GRCh38 (hg38)		NC_000010.11	Chr10	52,308,977	52,309,425
nssv18337010	Remapped	Perfect	NC_000010.10:g.540 68737_54069185del	GRCh37.p13	First Pass	NC_000010.10	Chr10	54,068,737	54,069,185

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18337010	0.017	4108	258418

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