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dbVar

Database of genomic structural variation

nsv6716120

Organism: Homo sapiens

Study:nstd229 (Jun et al. 2023)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:6,900

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 105 SVs from 26 studies. See in: genome view

Submitted genomic53,687,201-53,694,100

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv6716120	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000003.12	Chr3	53,687,201	53,694,100
nsv6716120	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	53,721,228	53,728,127

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv18483618	deletion	Sequencing	Split read and paired-end mapping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv18483618	Submitted genomic		NC_000003.12:g.536 87201_53694100del	GRCh38 (hg38)		NC_000003.12	Chr3	53,687,201	53,694,100
nssv18483618	Remapped	Perfect	NC_000003.11:g.537 21228_53728127del	GRCh37.p13	First Pass	NC_000003.11	Chr3	53,721,228	53,728,127

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv18483618	4e-06	1	275986

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