nsv6625625
- Organism: Homo sapiens
- Study:nstd224 (Zarrei et al. 2023)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37
- Variant Calls:31
- Validation:Not tested
- Clinical Assertions: No
- Region Size:43,417
- Publication(s):Zarrei et al. 2023
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1093 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 1093 SVs from 78 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv6625625 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nsv6625625 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv18281832 | deletion | OSC2188 | SNP array | Probe signal intensity | 8 |
| nssv18282597 | deletion | OSC2062 | SNP array | Probe signal intensity | 6 |
| nssv18282810 | deletion | OSC2225 | SNP array | Probe signal intensity | nssv18282811, nssv18282189 |
| nssv18284243 | deletion | OSC2580 | SNP array | Probe signal intensity | nssv18285182, nssv18285183, nssv18285184 |
| nssv18284670 | deletion | OSC2717 | SNP array | Probe signal intensity | 6 |
| nssv18287071 | deletion | OSC3105 | SNP array | Probe signal intensity | 5 |
| nssv18287668 | deletion | OSC3056 | SNP array | Probe signal intensity | 11 |
| nssv18287921 | deletion | OSC3199 | SNP array | Probe signal intensity | 5 |
| nssv18287999 | deletion | OSC3253 | SNP array | Probe signal intensity | 6 |
| nssv18288042 | deletion | OSC3283 | SNP array | Probe signal intensity | nssv18288272, nssv18288607, nssv18288907 |
| nssv18288661 | deletion | OSC3317 | SNP array | Probe signal intensity | 8 |
| nssv18290298 | deletion | OSC3584 | SNP array | Probe signal intensity | 8 |
| nssv18290818 | deletion | OSC0392 | SNP array | Probe signal intensity | 7 |
| nssv18291252 | deletion | OSC3637 | SNP array | Probe signal intensity | 7 |
| nssv18292059 | deletion | OSC4013 | SNP array | Probe signal intensity | nssv18292058, nssv18292753, nssv18293335 |
| nssv18292329 | deletion | OSC3957 | SNP array | Probe signal intensity | 5 |
| nssv18295673 | deletion | OSC4619 | SNP array | Probe signal intensity | nssv18295674, nssv18295447 |
| nssv18300034 | deletion | OSC0546 | SNP array | Probe signal intensity | 9 |
| nssv18311631 | deletion | OSC0776 | SNP array | Probe signal intensity | 5 |
| nssv18313348 | deletion | OSC0798 | SNP array | Probe signal intensity | nssv18313347, nssv18313352, nssv18313356 |
| nssv18315345 | deletion | OSC0841 | SNP array | Probe signal intensity | 9 |
| nssv18321213 | deletion | OSC1224 | SNP array | Probe signal intensity | 11 |
| nssv18322670 | deletion | OSC1345 | SNP array | Probe signal intensity | nssv18323211 |
| nssv18322878 | deletion | OSC1493 | SNP array | Probe signal intensity | 10 |
| nssv18323212 | deletion | OSC1346 | SNP array | Probe signal intensity | 13 |
| nssv18323295 | deletion | OSC1399 | SNP array | Probe signal intensity | nssv18323296 |
| nssv18323898 | deletion | OSC1572 | SNP array | Probe signal intensity | 7 |
| nssv18324419 | deletion | OSC1739 | SNP array | Probe signal intensity | nssv18323765, nssv18325061, nssv18323766 |
| nssv18324780 | deletion | OSC1805 | SNP array | Probe signal intensity | 8 |
| nssv18325109 | deletion | OSC1774 | SNP array | Probe signal intensity | nssv18323812, nssv18325397, nssv18323811 |
| nssv18325299 | deletion | OSC1906 | SNP array | Probe signal intensity | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv18281832 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18282597 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18282810 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18284243 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18284670 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18287071 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18287668 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18287921 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18287999 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18288042 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18288661 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18290298 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18290818 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18291252 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18292059 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18292329 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18295673 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18300034 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18311631 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18313348 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18315345 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18321213 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18322670 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18322878 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18323212 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18323295 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18323898 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18324419 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18324780 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18325109 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18325299 | Remapped | Perfect | NC_000001.11:g.(?_ 1452367)_(1495783_ ?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 1,452,367 | 1,495,783 |
| nssv18281832 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18282597 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18282810 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18284243 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18284670 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18287071 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18287668 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18287921 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18287999 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18288042 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18288661 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18290298 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18290818 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18291252 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18292059 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18292329 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18295673 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18300034 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18311631 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18313348 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18315345 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18321213 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18322670 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18322878 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18323212 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18323295 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18323898 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18324419 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18324780 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18325109 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 | ||
| nssv18325299 | Submitted genomic | NC_000001.10:g.(?_ 1387747)_(1431163_ ?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 1,387,747 | 1,431,163 |