nsv1187786

Organisms: Homo sapiens neanderthalensis, Homo sapiens ssp. Denisova, Homo sapiens

Study:nstd112 (Sudmant et al. 2015)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:226
Validation:Not tested
Clinical Assertions: No
Region Size:5,415

Publication(s):Sudmant et al. 2015

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 503 SVs from 38 studies. See in: genome view

Remapped(Score: Perfect):146,809,575-146,814,989

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1187786	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nsv1187786	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000023.10	ChrX	145,891,093	145,896,507

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv7445003	copy number variation	SAMEA1706756	Sequencing	Read depth	4	14,591
nssv7445004	copy number variation	SAMEA2164595	Sequencing	Read depth	2	14,625
nssv7445005	copy number variation	SAMEA2164384	Sequencing	Read depth	2	14,564
nssv7445006	copy number variation	SAMEA2164391	Sequencing	Read depth	2	14,595
nssv7445007	copy number variation	SAMEA2164386	Sequencing	Read depth	2	14,641
nssv7445008	copy number variation	SAMEA2164390	Sequencing	Read depth	2	14,669
nssv7445009	copy number variation	SAMEA2164160	Sequencing	Read depth	2	14,556
nssv7445010	copy number variation	SAMEA2164164	Sequencing	Read depth	2	14,628
nssv7445011	copy number variation	SAMN03783154	Sequencing	Read depth	2	14,532
nssv7445012	copy number variation	SAMN03783155	Sequencing	Read depth	1	14,583
nssv7445013	copy number variation	SAMN01036798	Sequencing	Read depth	4	14,574
nssv7445014	copy number variation	SAMN01036803	Sequencing	Read depth	2	14,603
nssv7445015	copy number variation	SAMN00779933	Sequencing	Read depth	2	14,586
nssv7445016	copy number variation	SAMN00779943	Sequencing	Read depth	4	14,621
nssv7445017	copy number variation	SAMN03783156	Sequencing	Read depth	4	14,581
nssv7445018	copy number variation	SAMN00001044	Sequencing	Read depth	4	14,529
nssv7445019	copy number variation	SAMN00001060	Sequencing	Read depth	2	14,536
nssv7445020	copy number variation	SAMN03783157	Sequencing	Read depth	4	14,647
nssv7445021	copy number variation	SAMN03783158	Sequencing	Read depth	4	14,668
nssv7445022	copy number variation	SAMEA2164453	Sequencing	Read depth	2	14,636
nssv7445023	copy number variation	SAMN00008078	Sequencing	Read depth	2	14,451
nssv7445024	copy number variation	SAMN00008106	Sequencing	Read depth	2	14,556
nssv7445025	copy number variation	SAMEA2164153	Sequencing	Read depth	2	14,487
nssv7445026	copy number variation	SAMN02603792	Sequencing	Read depth	2	14,497
nssv7445027	copy number variation	SAMN01036781	Sequencing	Read depth	2	14,494
nssv7445028	copy number variation	SAMN01036783	Sequencing	Read depth	4	14,544
nssv7445029	copy number variation	SAMEA2164490	Sequencing	Read depth	2	14,660
nssv7445030	copy number variation	SAMN02603829	Sequencing	Read depth	4	14,639
nssv7445031	copy number variation	SAMN03783159	Sequencing	Read depth	2	14,494
nssv7445032	copy number variation	SAMEA1706724	Sequencing	Read depth	2	14,499
nssv7445033	copy number variation	SAMN02603818	Sequencing	Read depth	2	14,636
nssv7445034	copy number variation	SAMN02603821	Sequencing	Read depth	2	14,590
nssv7445035	copy number variation	SAMN03783160	Sequencing	Read depth	4	14,691
nssv7445036	copy number variation	SAMN03783161	Sequencing	Read depth	4	14,683
nssv7445037	copy number variation	SAMEA2164340	Sequencing	Read depth	2	14,576
nssv7445038	copy number variation	SAMEA2164175	Sequencing	Read depth	2	14,530
nssv7445039	copy number variation	SAMN03783162	Sequencing	Read depth	2	14,644
nssv7445040	copy number variation	SAMEA2164380	Sequencing	Read depth	2	14,669
nssv7445041	copy number variation	SAMN03783163	Sequencing	Read depth	4	14,670
nssv7445042	copy number variation	SAMN02603802	Sequencing	Read depth	4	14,703
nssv7445043	copy number variation	SAMN02603804	Sequencing	Read depth	4	14,669
nssv7445044	copy number variation	SAMN03783164	Sequencing	Read depth	4	14,599
nssv7445045	copy number variation	SAMN03783165	Sequencing	Read depth	4	14,756
nssv7445046	copy number variation	SAMN03783166	Sequencing	Read depth	2	14,670
nssv7445047	copy number variation	SAMN03783167	Sequencing	Read depth	4	14,675
nssv7445048	copy number variation	SAMEA1706748	Sequencing	Read depth	4	14,594
nssv7445049	copy number variation	SAMN03783168	Sequencing	Read depth	4	14,640
nssv7445050	copy number variation	SAMN03783169	Sequencing	Read depth	4	14,665
nssv7445051	copy number variation	SAMEA2164395	Sequencing	Read depth	3	14,620
nssv7445052	copy number variation	SAMN03783170	Sequencing	Read depth	4	14,618
nssv7445053	copy number variation	SAMN03783171	Sequencing	Read depth	5	14,288
nssv7445054	copy number variation	SAMN03783172	Sequencing	Read depth	4	14,778
nssv7445055	copy number variation	SAMN03783173	Sequencing	Read depth	4	14,664
nssv7445056	copy number variation	SAMN03783174	Sequencing	Read depth	2	14,675
nssv7445057	copy number variation	SAMEA1487354	Sequencing	Read depth	4	13,715
nssv7445058	copy number variation	SAMEA1706711	Sequencing	Read depth	4	14,408
nssv7445059	copy number variation	SAMN03783175	Sequencing	Read depth	2	14,638
nssv7445060	copy number variation	SAMN03783176	Sequencing	Read depth	2	14,619
nssv7445061	copy number variation	SAMN03783177	Sequencing	Read depth	2	14,680
nssv7445062	copy number variation	SAMN03783178	Sequencing	Read depth	2	14,666
nssv7445063	copy number variation	SAMN02603795	Sequencing	Read depth	4	14,463
nssv7445064	copy number variation	SAMEA2164252	Sequencing	Read depth	2	14,683
nssv7445065	copy number variation	SAMEA2164535	Sequencing	Read depth	2	14,624
nssv7445066	copy number variation	SAMEA1706737	Sequencing	Read depth	4	14,566
nssv7445067	copy number variation	SAMN03783179	Sequencing	Read depth	4	14,391
nssv7445068	copy number variation	SAMEA1706731	Sequencing	Read depth	4	14,659
nssv7445069	copy number variation	SAMEA1706716	Sequencing	Read depth	3	14,592
nssv7445070	copy number variation	SAMEA2164290	Sequencing	Read depth	2	14,669
nssv7445071	copy number variation	SAMEA2164480	Sequencing	Read depth	2	14,476
nssv7445072	copy number variation	SAMN03783180	Sequencing	Read depth	4	14,565
nssv7445073	copy number variation	SAMN03783181	Sequencing	Read depth	2	14,709
nssv7445074	copy number variation	SAMN03783182	Sequencing	Read depth	4	14,676
nssv7445075	copy number variation	SAMN00001633	Sequencing	Read depth	1	14,518
nssv7445076	copy number variation	SAMN00249816	Sequencing	Read depth	3	14,499
nssv7445077	copy number variation	SAMN00249822	Sequencing	Read depth	2	14,670
nssv7445078	copy number variation	SAMN03783183	Sequencing	Read depth	3	14,720
nssv7445079	copy number variation	SAMN00798868	Sequencing	Read depth	1	14,640
nssv7445080	copy number variation	SAMEA2164540	Sequencing	Read depth	2	14,622
nssv7445081	copy number variation	SAMEA1706757	Sequencing	Read depth	4	14,601
nssv7445082	copy number variation	SAMEA2164448	Sequencing	Read depth	2	14,687
nssv7445083	copy number variation	SAMN03783184	Sequencing	Read depth	4	14,718
nssv7445084	copy number variation	SAMEA1706740	Sequencing	Read depth	4	14,672
nssv7445085	copy number variation	SAMEA2164473	Sequencing	Read depth	1	14,607
nssv7445086	copy number variation	SAMEA2164552	Sequencing	Read depth	1	14,643
nssv7445087	copy number variation	SAMEA2164557	Sequencing	Read depth	2	14,620
nssv7445088	copy number variation	SAMEA1706733	Sequencing	Read depth	4	14,466
nssv7445089	copy number variation	SAMEA2164456	Sequencing	Read depth	2	14,524
nssv7445090	copy number variation	SAMN03783185	Sequencing	Read depth	4	14,639
nssv7445091	copy number variation	SAMEA2164550	Sequencing	Read depth	2	14,592
nssv7445092	copy number variation	SAMN03783186	Sequencing	Read depth	2	14,725
nssv7445093	copy number variation	SAMN03783187	Sequencing	Read depth	3	14,688
nssv7445094	copy number variation	SAMEA2164561	Sequencing	Read depth	1	14,640
nssv7445095	copy number variation	SAMN03783188	Sequencing	Read depth	3	14,511
nssv7445096	copy number variation	SAMEA2164415	Sequencing	Read depth	2	14,657
nssv7445097	copy number variation	SAMEA1706717	Sequencing	Read depth	4	14,656
nssv7445098	copy number variation	SAMEA2164522	Sequencing	Read depth	2	14,637
nssv7445099	copy number variation	SAMN03783189	Sequencing	Read depth	3	14,403
nssv7445100	copy number variation	SAMEA2164485	Sequencing	Read depth	2	14,504
nssv7445101	copy number variation	SAMEA2164489	Sequencing	Read depth	2	14,665
nssv7445102	copy number variation	SAMEA2164437	Sequencing	Read depth	2	14,735

Showing 100 of 226

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv7445003	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445004	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445005	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445006	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445007	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445008	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445009	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445010	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445011	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445012	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445013	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445014	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445015	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445016	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445017	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445018	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445019	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445020	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445021	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445022	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445023	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445024	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445025	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445026	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445027	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445028	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445029	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445030	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445031	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445032	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445033	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445034	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445035	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445036	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445037	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445038	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445039	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445040	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445041	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445042	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445043	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445044	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445045	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445046	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445047	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445048	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445049	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445050	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445051	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445052	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445053	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445054	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445055	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445056	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445057	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445058	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445059	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445060	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445061	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445062	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445063	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445064	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445065	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445066	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445067	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445068	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445069	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445070	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445071	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445072	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445073	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445074	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445075	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445076	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445077	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445078	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445079	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445080	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445081	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445082	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445083	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445084	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445085	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445086	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445087	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445088	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445089	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445090	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445091	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445092	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445093	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445094	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445095	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445096	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445097	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445098	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445099	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445100	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445101	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989
nssv7445102	Remapped	Perfect	GRCh38.p12	First Pass	NC_000023.11	ChrX	146,809,575	146,814,989

Showing 100 of 452

dbVar

Database of genomic structural variation

nsv1187786

Links to Other Resources

Genome View

Variant Region Placement Information

Variant Call Information

Variant Call Placement Information

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant