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Metagenome-Assembled Genome: SRR17301065_bin.27_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114448152; SRA: ERS16434796
Organism
uncultured Granulicatella sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae; Granulicatella; environmental samples
Attributes
broad-scale environmental contexthuman digestive system
collection date2020-08-11
environmental mediumsaliva
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameIn-depth analysis of saliva samples from 3-year-old children with high caries and caries-free children using metagenomic sequencing technology.
sample nameSRR17301065_bin.27_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR17301065_bin.27_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score50.55
completeness softwareCheckM
contamination score1.68
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN24290154
scientific_nameuncultured Granulicatella sp.
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Granulicatella;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR17301065 of study SRP352022.

BioProject
PRJEB56572
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114448152
ID:
37600133

BioProject Nucleotide

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