ID 888935 - BioProject

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Accession: PRJEB56572 ID: 888935

EMG produced TPA metagenomics assembly of PRJNA791464 data set (Oral saliva microorganisms in 3-year-old children with different caries risk).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA791464, and was assembled with metaSPAdes v3. More...

Accession	PRJEB56572
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 10-Oct-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	9839
WGS master	144
Publications
PubMed	1
PMC	1
Other datasets
BioSample	144
Assembly	144

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

144
144

Assembly	WGS	BioSample	Taxonomy
GCA_963534635.1	CAUSTT000000000	SAMEA114448071	Actinomyces gerencseriae
GCA_963536875.1	CAUTBS000000000	SAMEA114448068	Actinomyces graevenitzii
GCA_963539015.1	CAUTLF000000000	SAMEA114448182	Actinomyces graevenitzii
GCA_963535835.1	CAUSYN000000000	SAMEA114448176	Actinomyces oris
GCA_963538195.1	CAUTHK000000000	SAMEA114448108	Alloprevotella tannerae
GCA_963534735.1	CAUSTY000000000	SAMEA114448158	Alloprevotella tannerae
GCA_963535295.1	CAUSWX000000000	SAMEA114448165	Campylobacter concisus
GCA_963537205.1	CAUTEJ000000000	SAMEA114448138	Campylobacter concisus
GCA_963535805.1	CAUSYC000000000	SAMEA114448159	Capnocytophaga gingivalis
GCA_963537575.1	CAUTFX000000000	SAMEA114448086	Capnocytophaga leadbetteri
GCA_963537875.1	CAUTGY000000000	SAMEA114448120	Corynebacterium durum
GCA_963537635.1	CAUTGM000000000	SAMEA114448055	Fusobacterium periodonticum
GCA_963534955.1	CAUSVJ000000000	SAMEA114448076	Fusobacterium pseudoperiodonticum
GCA_963539265.1	CAUTLO000000000	SAMEA114448088	Fusobacterium pseudoperiodonticum
GCA_963534415.1	CAUSSX000000000	SAMEA114448143	Haemophilus haemolyticus
GCA_963537955.1	CAUTFW000000000	SAMEA114448089	Haemophilus parainfluenzae
GCA_963539255.1	CAUTLJ000000000	SAMEA114448126	Haemophilus parainfluenzae
GCA_963534915.1	CAUSVI000000000	SAMEA114448090	Haemophilus sputorum
GCA_963537555.1	CAUTEZ000000000	SAMEA114448136	Hoylesella nanceiensis
GCA_963536405.1	CAUTBN000000000	SAMEA114448151	Hoylesella shahii
GCA_963537895.1	CAUTGP000000000	SAMEA114448111	Kingella denitrificans
GCA_963538225.1	CAUTIZ000000000	SAMEA114448168	Lautropia mirabilis
GCA_963536755.1	CAUTBH000000000	SAMEA114448141	Leptotrichia wadei
GCA_963537825.1	CAUTGN000000000	SAMEA114448140	Leptotrichia wadei
GCA_963538435.1	CAUTHT000000000	SAMEA114448104	Leptotrichia wadei
GCA_963536195.1	CAUSZL000000000	SAMEA114448059	Megasphaera micronuciformis
GCA_963537395.1	CAUTEA000000000	SAMEA114448175	Mogibacterium diversum
GCA_963536185.1	CAUTAB000000000	SAMEA114448083	Neisseria elongata
GCA_963534715.1	CAUSUE000000000	SAMEA114448156	Oribacterium parvum
GCA_963537195.1	CAUTEG000000000	SAMEA114448058	Oribacterium sinus
GCA_963535235.1	CAUSWD000000000	SAMEA114448102	Prevotella aurantiaca
GCA_963537835.1	CAUTFS000000000	SAMEA114448131	Prevotella histicola
GCA_963536235.1	CAUSZZ000000000	SAMEA114448078	Prevotella jejuni
GCA_963537975.1	CAUTGW000000000	SAMEA114448127	Prevotella melaninogenica
GCA_963536145.1	CAUTAC000000000	SAMEA114448066	Prevotella melaninogenica
GCA_963537745.1	CAUTFK000000000	SAMEA114448119	Prevotella pallens
GCA_963537615.1	CAUTGO000000000	SAMEA114448113	Rothia aeria
GCA_963537585.1	CAUTFF000000000	SAMEA114448173	Rothia mucilaginosa
GCA_963539245.1	CAUTJW000000000	SAMEA114448064	Rothia mucilaginosa
GCA_963539025.1	CAUTJU000000000	SAMEA114448072	Rothia mucilaginosa
GCA_963535985.1	CAUSYS000000000	SAMEA114448139	Rothia mucilaginosa
GCA_963537905.1	CAUTFM000000000	SAMEA114448130	Rothia mucilaginosa
GCA_963538015.1	CAUTFI000000000	SAMEA114448096	Rothia mucilaginosa
GCA_963537805.1	CAUTFJ000000000	SAMEA114448099	Rothia mucilaginosa
GCA_963538305.1	CAUTHP000000000	SAMEA114448115	Rothia mucilaginosa
GCA_963538455.1	CAUTHR000000000	SAMEA114448153	Rothia mucilaginosa
GCA_963538695.1	CAUTIR000000000	SAMEA114448178	Rothia mucilaginosa
GCA_963537925.1	CAUTGV000000000	SAMEA114448103	Segatella salivae
GCA_963536025.1	CAUSYZ000000000	SAMEA114448132	Segatella salivae
GCA_963535355.1	CAUSWB000000000	SAMEA114448093	Stomatobaculum longum
GCA_963538805.1	CAUTJM000000000	SAMEA114448095	Streptococcus salivarius
GCA_963538215.1	CAUTIA000000000	SAMEA114448128	Streptococcus salivarius
GCA_963538185.1	CAUTHF000000000	SAMEA114448123	Streptococcus salivarius
GCA_963537335.1	CAUTEB000000000	SAMEA114448183	Streptococcus salivarius
GCA_963538495.1	CAUTJC000000000	SAMEA114448082	Streptococcus sanguinis
GCA_963535005.1	CAUSVO000000000	SAMEA114448075	Streptococcus sanguinis
GCA_963539075.1	CAUTLI000000000	SAMEA114448177	Trueperella pyogenes
GCA_963535085.1	CAUSUT000000000	SAMEA114448094	[Eubacterium] sulci
GCA_963538875.1	CAUTJR000000000	SAMEA114448166	[Eubacterium] sulci
GCA_963538425.1	CAUTIQ000000000	SAMEA114448047	[Eubacterium] sulci
GCA_963538845.1	CAUTKC000000000	SAMEA114448084	uncultured Abiotrophia sp.
GCA_963536445.1	CAUTBK000000000	SAMEA114448135	uncultured Actinomyces sp.
GCA_963534945.1	CAUSUZ000000000	SAMEA114448045	uncultured Actinomyces sp.
GCA_963538835.1	CAUTKY000000000	SAMEA114448112	uncultured Actinomyces sp.
GCA_963535605.1	CAUSXU000000000	SAMEA114448170	uncultured Actinomyces sp.
GCA_963536415.1	CAUTBF000000000	SAMEA114448145	uncultured Actinomyces sp.
GCA_963537765.1	CAUTGA000000000	SAMEA114448137	uncultured Actinomyces sp.
GCA_963534625.1	CAUSTV000000000	SAMEA114448180	uncultured Actinomyces sp.
GCA_963537675.1	CAUTGR000000000	SAMEA114448063	uncultured Actinomycetaceae bacterium
GCA_963538975.1	CAUTKW000000000	SAMEA114448121	uncultured Actinomycetaceae bacterium
GCA_963537715.1	CAUTFN000000000	SAMEA114448149	uncultured Alloprevotella sp.
GCA_963536905.1	CAUTBW000000000	SAMEA114448056	uncultured Alloprevotella sp.
GCA_963538475.1	CAUTIE000000000	SAMEA114448092	uncultured Atopobiaceae bacterium
GCA_963538075.1	CAUTGQ000000000	SAMEA114448051	uncultured Atopobiaceae bacterium
GCA_963537985.1	CAUTGI000000000	SAMEA114448110	uncultured Atopobiaceae bacterium
GCA_963537755.1	CAUTFZ000000000	SAMEA114448117	uncultured Atopobium sp.
GCA_963535035.1	CAUSVD000000000	SAMEA114448052	uncultured Atopobium sp.
GCA_963535155.1	CAUSVW000000000	SAMEA114448171	uncultured Atopobium sp.
GCA_963534395.1	CAUSSV000000000	SAMEA114448134	uncultured Atopobium sp.
GCA_963536095.1	CAUSZQ000000000	SAMEA114448148	uncultured Atopobium sp.
GCA_963534685.1	CAUSUD000000000	SAMEA114448073	uncultured Atopobium sp.
GCA_963537695.1	CAUTFA000000000	SAMEA114448080	uncultured Bergeyella sp.
GCA_963535305.1	CAUSWN000000000	SAMEA114448162	uncultured Candidatus Gracilibacteria bacterium
GCA_963535955.1	CAUSYQ000000000	SAMEA114448100	uncultured Candidatus Gracilibacteria bacterium
GCA_963537475.1	CAUTDI000000000	SAMEA114448054	uncultured Candidatus Saccharibacteria bacterium
GCA_963535785.1	CAUSXI000000000	SAMEA114448154	uncultured Candidatus Saccharibacteria bacterium
GCA_963536165.1	CAUSZB000000000	SAMEA114448050	uncultured Candidatus Saccharibacteria bacterium
GCA_963538675.1	CAUTHM000000000	SAMEA114448185	uncultured Candidatus Saccharibacteria bacterium
GCA_963538135.1	CAUTHL000000000	SAMEA114448074	uncultured Candidatus Saccharibacteria bacterium
GCA_963534585.1	CAUSTW000000000	SAMEA114448160	uncultured Capnocytophaga sp.
GCA_963538565.1	CAUTHW000000000	SAMEA114448167	uncultured Erysipelotrichaceae bacterium
GCA_963536015.1	CAUSYW000000000	SAMEA114448107	uncultured Eubacteriales bacterium
GCA_963537965.1	CAUTHB000000000	SAMEA114448081	uncultured Fusobacterium sp.
GCA_963534455.1	CAUSTP000000000	SAMEA114448152	uncultured Granulicatella sp.
GCA_963535185.1	CAUSWM000000000	SAMEA114448163	uncultured Haemophilus sp.
GCA_963538995.1	CAUTKZ000000000	SAMEA114448125	uncultured Kingella sp.
GCA_963538085.1	CAUTHC000000000	SAMEA114448122	uncultured Lachnoanaerobaculum sp.
GCA_963535075.1	CAUSVH000000000	SAMEA114448060	uncultured Lachnoanaerobaculum sp.
GCA_963534865.1	CAUSVF000000000	SAMEA114448044	uncultured Lachnospiraceae bacterium
GCA_963537625.1	CAUTFE000000000	SAMEA114448053	uncultured Lachnospiraceae bacterium
GCA_963536135.1	CAUSZX000000000	SAMEA114448043	uncultured Leptotrichia sp.
GCA_963537445.1	CAUTEI000000000	SAMEA114448179	uncultured Moraxella sp.
GCA_963535915.1	CAUSZF000000000	SAMEA114448085	uncultured Neisseria sp.
GCA_963538715.1	CAUTJO000000000	SAMEA114448042	uncultured Neisseria sp.
GCA_963537545.1	CAUTFB000000000	SAMEA114448091	uncultured Neisseria sp.
GCA_963535725.1	CAUSYE000000000	SAMEA114448172	uncultured Neisseria sp.
GCA_963536455.1	CAUTCE000000000	SAMEA114448061	uncultured Neisseria sp.
GCA_963539205.1	CAUTLM000000000	SAMEA114448161	uncultured Neisseriaceae bacterium
GCA_963535165.1	CAUSVZ000000000	SAMEA114448169	uncultured Peptostreptococcus sp.
GCA_963536615.1	CAUTCG000000000	SAMEA114448070	uncultured Porphyromonadaceae bacterium
GCA_963534435.1	CAUSTG000000000	SAMEA114448144	uncultured Porphyromonadaceae bacterium
GCA_963537915.1	CAUTGB000000000	SAMEA114448098	uncultured Porphyromonadaceae bacterium
GCA_963538625.1	CAUTJB000000000	SAMEA114448069	uncultured Porphyromonas sp.
GCA_963538555.1	CAUTIW000000000	SAMEA114448164	uncultured Porphyromonas sp.
GCA_963538895.1	CAUTKU000000000	SAMEA114448077	uncultured Porphyromonas sp.
GCA_963536175.1	CAUSZO000000000	SAMEA114448062	uncultured Prevotella sp.
GCA_963537645.1	CAUTFR000000000	SAMEA114448133	uncultured Prevotella sp.
GCA_963538145.1	CAUTIK000000000	SAMEA114448155	uncultured Prevotella sp.
GCA_963538545.1	CAUTIC000000000	SAMEA114448114	uncultured Prevotella sp.
GCA_963537795.1	CAUTGE000000000	SAMEA114448046	uncultured Prevotellaceae bacterium
GCA_963537865.1	CAUTFT000000000	SAMEA114448116	uncultured Prevotellaceae bacterium
GCA_963534935.1	CAUSUO000000000	SAMEA114448087	uncultured Prevotellaceae bacterium
GCA_963534485.1	CAUSTD000000000	SAMEA114448150	uncultured Prevotellaceae bacterium
GCA_963537655.1	CAUTFC000000000	SAMEA114448101	uncultured Prevotellaceae bacterium
GCA_963537105.1	CAUTDA000000000	SAMEA114448049	uncultured Rothia sp.
GCA_963538055.1	CAUTGJ000000000	SAMEA114448057	uncultured Rothia sp.
GCA_963536625.1	CAUTAK000000000	SAMEA114448147	uncultured Rothia sp.
GCA_963536315.1	CAUTAG000000000	SAMEA114448048	uncultured Rothia sp.
GCA_963535145.1	CAUSWQ000000000	SAMEA114448105	uncultured Selenomonas sp.
GCA_963535425.1	CAUSWT000000000	SAMEA114448118	uncultured Selenomonas sp.
GCA_963539165.1	CAUTLH000000000	SAMEA114448109	uncultured Solobacterium sp.
GCA_963535905.1	CAUSZS000000000	SAMEA114448097	uncultured Solobacterium sp.
GCA_963537685.1	CAUTGK000000000	SAMEA114448124	uncultured Solobacterium sp.
GCA_963538035.1	CAUTGX000000000	SAMEA114448142	uncultured Solobacterium sp.
GCA_963536045.1	CAUSZI000000000	SAMEA114448079	uncultured Streptococcus sp.
GCA_963537705.1	CAUTFO000000000	SAMEA114448129	uncultured Streptococcus sp.
GCA_963537775.1	CAUTGF000000000	SAMEA114448067	uncultured Streptococcus sp.
GCA_963537935.1	CAUTGL000000000	SAMEA114448106	uncultured Streptococcus sp.
GCA_963534615.1	CAUSTL000000000	SAMEA114448181	uncultured Streptococcus sp.
GCA_963537125.1	CAUTCY000000000	SAMEA114448184	uncultured Veillonella sp.
GCA_963534575.1	CAUSTR000000000	SAMEA114448065	uncultured Veillonella sp.
GCA_963535715.1	CAUSXZ000000000	SAMEA114448174	uncultured Veillonella sp.
GCA_963535615.1	CAUSXP000000000	SAMEA114448146	uncultured Veillonella sp.
GCA_963534895.1	CAUSUN000000000	SAMEA114448157	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA791464 data set (Oral saliva microorganisms in 3-year-old children with different caries risk).

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