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Metagenome-assembled genome: SRR13573577_bin.44_metawrap_v1.3_MAG

Identifiers
BioSample: SAMEA111454620; SRA: ERS13549153
Organism
uncultured Alistipes sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples
Attributes
broad-scale environmental contextmouse digestive system
collection date2019-05-31
environmental mediumfeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameHuman amylin is produced by mammary gland bioreactor to provide high activity and low cost protein for the treatment of diabetes. This study investigated the effect of amylin in oral milk on intestinal microflora in mice.
sample nameSRR13573577_bin.44_metawrap_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-10-11
ENA-LAST-UPDATE2022-10-11
External IdSAMEA111454620
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-10-11T16:18:41Z
INSDC last update2022-10-11T16:18:41Z
INSDC statuspublic
Submitter IdSRR13573577_bin.44_metawrap_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3
broker nameEMG broker account, EMBL-EBI
completeness score76.88
completeness softwareCheckM
contamination score1.79
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextdigestive tube
metagenomic sourcemouse gut metagenome
sample derived fromSAMN17526366
sequencing methodHiSeq X Ten
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR13573577 of study SRP303709.

BioProject
PRJEB55923
Retrieve all samples from this project

Submission
EBI; 2022-10-12
Accession:
SAMEA111454620
ID:
31250818

BioProject Nucleotide

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