Escherichia coli (ID 342435) - BioProject

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Accession: PRJNA342435 ID: 342435

Escherichia coli

GenomeTrakr Project: Joint Institute for Food Safety and Applied Nutrition

See Genome Information for Escherichia coli

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This project is a component of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp.

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52 additional projects are components of the GenomeTrakr umbrella project for Escherichia coli and Shigella sp..

9333 additional projects are related by organism.

Whole genome sequencing of cultured Escherichia coli as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.

Accession	PRJNA342435
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 3-Mar-2017 FDA
Related Resources	Joint Institute for Food Safety and Applied Nutrition
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	17521
WGS master	69
SRA Experiments	157
Other datasets
BioSample	154
Assembly	69

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

69
69

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_002016545.1	MVNJ00000000	SAMN06159507	UMDKSU-2013-3-178C	Escherichia coli
GCA_002016535.1	MVNL00000000	SAMN06159505	UMDKSU-2013-3-314E	Escherichia coli
GCA_002016495.1	MVND00000000	SAMN06220094	UMDKSU-2013-3-75E	Escherichia coli
GCA_002016475.1	MVNP00000000	SAMN06159532	UMDKSU-2013-3-575A	Escherichia coli
GCA_002016465.1	MVNO00000000	SAMN06159533	UMDKSU-2013-3-540A	Escherichia coli
GCA_002016455.1	MVNN00000000	SAMN06159503	UMDKSU-2013-3-544F	Escherichia coli
GCA_002016435.1	MVNM00000000	SAMN06159504	UMDKSU-2013-3-416C	Escherichia coli
GCA_002016405.1	MVNK00000000	SAMN06159506	UMDKSU-2013-3-308C	Escherichia coli
GCA_002016385.1	MVNI00000000	SAMN06159498	UMDKSU-2013-3-164B	Escherichia coli
GCA_002016375.1	MVNH00000000	SAMN06159499	UMDKSU-2013-3-132F	Escherichia coli
GCA_002016355.1	MVNG00000000	SAMN06159500	UMDKSU-2013-3-131E	Escherichia coli
GCA_002016305.1	MVNF00000000	SAMN06220139	UMDKSU-2013-3-99D	Escherichia coli
GCA_002016295.1	MVNE00000000	SAMN06220093	UMDKSU-2013-3-111C	Escherichia coli
GCA_002016285.1	MVNC00000000	SAMN06220110	UMDKSU-2014-5-1451D	Escherichia coli
GCA_002016275.1	MVNB00000000	SAMN06220112	UMDKSU-2014-5-965B	Escherichia coli
GCA_002016225.1	MVNA00000000	SAMN06220113	UMDKSU-2014-5-941B	Escherichia coli
GCA_002016215.1	MVMZ00000000	SAMN06220108	UMDKSU-2014-5-1838G	Escherichia coli
GCA_002016205.1	MVMY00000000	SAMN06220109	UMDKSU-2014-5-1565C	Escherichia coli
GCA_002016195.1	MVMX00000000	SAMN06220111	UMDKSU-2014-5-1253A	Escherichia coli
GCA_002016155.1	MVMT00000000	SAMN06220117	UMDKSU-2014-5-863D	Escherichia coli
GCA_002016165.1	MVMV00000000	SAMN06220115	UMDKSU-2014-5-925A	Escherichia coli
GCA_002016135.1	MVMS00000000	SAMN06220118	UMDKSU-2014-5-841G	Escherichia coli
GCA_002016085.1	MVMP00000000	SAMN06220121	UMDKSU-2014-5-614A	Escherichia coli
GCA_002016075.1	MVMR00000000	SAMN06220119	UMDKSU-2014-5-655A	Escherichia coli
GCA_002016065.1	MVMO00000000	SAMN06220122	UMDKSU-2014-5-611A	Escherichia coli
GCA_002016055.1	MVMN00000000	SAMN06220123	UMDKSU-2014-5-610A	Escherichia coli
GCA_002016025.1	MVML00000000	SAMN06220125	UMDKSU-2014-5-370H	Escherichia coli
GCA_002016015.1	MVMM00000000	SAMN06220124	UMDKSU-2014-5-548J	Escherichia coli
GCA_002015965.1	MVMK00000000	SAMN06220126	UMDKSU-2014-5-332A	Escherichia coli
GCA_002015975.1	MVMG00000000	SAMN06220132	UMDKSU-2014-5-139D	Escherichia coli
GCA_002015945.1	MVMJ00000000	SAMN06220127	UMDKSU-2014-5-330A	Escherichia coli
GCA_002015935.1	MVMH00000000	SAMN06220131	UMDKSU-2014-5-140E	Escherichia coli
GCA_002015895.1	MVMF00000000	SAMN06220133	UMDKSU-2014-5-138A	Escherichia coli
GCA_002015885.1	MVME00000000	SAMN06220134	UMDKSU-2014-5-94C	Escherichia coli
GCA_002015875.1	MVMD00000000	SAMN06220135	UMDKSU-2014-5-89A	Escherichia coli
GCA_002015855.1	MVMC00000000	SAMN06220081	UMDKSU-2014-5-82A	Escherichia coli
GCA_002015825.1	MVMB00000000	SAMN06220082	UMDKSU-2014-5-58F	Escherichia coli
GCA_002015815.1	MVMA00000000	SAMN06220083	UMDKSU-2014-5-10D	Escherichia coli
GCA_002015775.1	MVLY00000000	SAMN06220085	UMDKSU-2013-3-557A	Escherichia coli
GCA_002015765.1	MVLZ00000000	SAMN06220084	UMDKSU-2014-5-7C	Escherichia coli
GCA_002015755.1	MVLW00000000	SAMN06220087	UMDKSU-2013-3-539F	Escherichia coli
GCA_002015735.1	MVLX00000000	SAMN06220086	UMDKSU-2013-3-552F	Escherichia coli
GCA_002015705.1	MVLU00000000	SAMN06220089	UMDKSU-2013-3-314B	Escherichia coli
GCA_002015695.1	MVLT00000000	SAMN06220090	UMDKSU-2013-3-304D	Escherichia coli
GCA_002015675.1	MVLQ00000000	SAMN06220076	UMDKSU-2013-3-141B	Escherichia coli
GCA_002015635.1	MVLO00000000	SAMN06220078	UMDKSU-2013-3-118A	Escherichia coli
GCA_002015625.1	MVLM00000000	SAMN06220080	UMDKSU-2013-3-80A	Escherichia coli
GCA_002015615.1	MVMU00000000	SAMN06220116	UMDKSU-2014-5-888D	Escherichia coli
GCA_002015595.1	MVLP00000000	SAMN06220077	UMDKSU-2013-3-135A	Escherichia coli
GCA_002015555.1	MVMW00000000	SAMN06220114	UMDKSU-2014-5-933A	Escherichia coli
GCA_002015545.1	MVMQ00000000	SAMN06220120	UMDKSU-2014-5-650B	Escherichia coli
GCA_002015535.1	MVMI00000000	SAMN06220128	UMDKSU-2014-5-288B	Escherichia coli
GCA_002015515.1	MVLV00000000	SAMN06220088	UMDKSU-2013-3-409B	Escherichia coli
GCA_002015475.1	MVLN00000000	SAMN06220079	UMDKSU-2013-3-104A	Escherichia coli
GCA_002015465.1	MVLR00000000	SAMN06220092	UMDKSU-2013-3-144B	Escherichia coli
GCA_002015455.1	MVLL00000000	SAMN06220095	UMDKSU-2013-3-526E	Escherichia coli
GCA_002015435.1	MVLS00000000	SAMN06220091	UMDKSU-2013-3-174C	Escherichia coli
GCA_002015385.1	MVLK00000000	SAMN06220096	UMDKSU-2013-3-536F	Escherichia coli
GCA_002015375.1	MVLJ00000000	SAMN06220097	UMDKSU-2013-3-533B	Escherichia coli
GCA_002015365.1	MVLI00000000	SAMN06220098	UMDKSU-2013-3-416C	Escherichia coli
GCA_002015355.1	MVLG00000000	SAMN06220100	UMDKSU-2013-3-296D	Escherichia coli
GCA_002015325.1	MVLH00000000	SAMN06220099	UMDKSU-2013-3-331C	Escherichia coli
GCA_002015315.1	MVLF00000000	SAMN06220101	UMDKSU-2013-3-492A	Escherichia coli
GCA_002015275.1	MVLD00000000	SAMN06220103	UMDKSU-2013-3-134A	Escherichia coli
GCA_002015265.1	MVLE00000000	SAMN06220102	UMDKSU-2013-3-435B	Escherichia coli
GCA_002015255.1	MVLC00000000	SAMN06220104	UMDKSU-2013-3-141E	Escherichia coli
GCA_002015235.1	MVKZ00000000	SAMN06220107	UMDKSU-2013-3-73A	Escherichia coli
GCA_002015205.1	MVLA00000000	SAMN06220106	UMDKSU-2013-3-98B	Escherichia coli
GCA_002015195.1	MVLB00000000	SAMN06220105	UMDKSU-2013-3-109D	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	32
Data volume, Mbytes	19811

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Escherichia coli

GenomeTrakr Project: Joint Institute for Food Safety and Applied Nutrition

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