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Pan Y, Cheng T, Wang Y, Bryant SH. Pathway Analysis for Drug Repositioning Based on Public Database Mining. J Chem Inf Model. 2014 Jan 26 (Epub ahead of print) doi: 10.1021/ci4005354 [PubMed PMID: 24460210] [Full Text at ACS Publications] |
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Madej T, Addess KJ, Fong JH, Geer LY, Geer RC, Lanczycki CJ, Liu C, Lu S, Marchler-Bauer A, Panchenko AR, Chen J, Thiessen PA, Wang Y, Zhang D, Bryant SH. MMDB: 3D structures and macromolecular interactions. Nucleic Acids Res. 2012 Jan; 40(Database issue):D461-4. doi: 10.1093/nar/gkr1162. Epub 2011 Dec 1. doi: 10.1093/nar/gkr1162. [PubMed PMID: 22135289] [Full Text at Oxford Academic] |
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Wang Y, Addess KJ, Chen J, Geer LY, He J, He S, Lu S, Madej T, Marchler-Bauer A, Thiessen PA, Zhang N, Bryant SH. MMDB: annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Res. 2007 Jan; 35(Database issue): D298-300. doi: 10.1093/nar/gkl952 [PubMed PMID: 17135201] [Full Text at Oxford Academic] |
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Chen J, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler-Bauer A, Marchler GH, Mazumder R, Nikolskaya AN, Rao BS, Panchenko AR, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH. MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 2003 Jan; 31(1): 474-7. [PubMed PMID: 12520055] [Full Text at Oxford Academic] |
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Wang Y, Anderson JB, Chen J, Geer LY, He S, Hurwitz DI, Liebert CA, Madej T, Marchler GH, Marchler-Bauer A, Panchenko AR, Shoemaker BA, Song JS, Thiessen PA, Yamashita RA, Bryant SH. MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 2002 Jan 1;30(1):249-52. [PubMed PMID: 11752307] [Full Text at Oxford Academic] |
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Wang Y, Addess KJ, Geer L, Madej T, Marchler-Bauer A, Zimmerman D, Bryant SH. MMDB: 3D structure data in Entrez. Nucleic Acids Res. 2000 Jan 1;28(1):243-5. [PubMed PMID: 10592236] [Full Text at Oxford Academic] |
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Marchler-Bauer A, Addess KJ, Chappey C, Geer L, Madej T, Matsuo Y, Wang Y, Bryant SH. MMDB: Entrez's 3D structure database. Nucleic Acids Res. 1999 Jan 1;27(1):240-3. [PubMed PMID: 9847190] [Full Text at Oxford Academic] |
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Bryant SH and Hogue CW. Structural neighbors and structural alignments: The science behind Entrez/3D. Presented at the IUCr Macromolecular Crystallography Computing School, August 1996. |
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Hogue CW, Ohkawa H, Bryant SH. A dynamic look at structures: WWW-Entrez and the Molecular Modeling Database. Trends Biochem Sci. 1996 Jun;21(6):226-9. [PubMed PMID: 8744358] [Full Text at Elsevier] |
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Ohkawa H, Ostell J, Bryant S. MMDB: an ASN.1 specification for macromolecular structure. Proc Int Conf Intell Syst Mol Biol. 1995;3:259-67. [PubMed PMID: 7584445] |
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(See all publications about NCBI's 3D Macromolecular Structures Resources, including those listed here plus articles by the NCBI Structure group describing the results of computational biology research on the Molecular Modeling Database, such as 3D structure comparisons, biomolecular interactions, and more.) |
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