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Platform GPL34510 Query DataSets for GPL34510
Status Public on Nov 25, 2024
Title Illumina Custom Infinium MethylationEPIC v2.0
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Illumina, Inc.
Manufacture protocol See manufacturer's website
 
Description Custom EPIC v2 array that includes all the probes from the regular EPICv2 array and 6,930 additional probes spiked in.
 
Submission date May 21, 2024
Last update date Nov 26, 2024
Contact name Dereje Jima
E-mail(s) [email protected]
Organization name NCSU
Department CHHE
Street address 850 Main Campus Drive
City RALEIGH
State/province NC
ZIP/Postal code 27606
Country USA
 
Samples (3) GSM8285452, GSM8285453, GSM8285454
Series (1)
GSE268070 Creation and Validation of the First Infinium DNA Methylation Array for the Human Imprintome [blood_epic]

Data table header descriptions
ID
SPOT_ID
Name
U
AlleleA_ProbeSeq
M
AlleleB_ProbeSeq
Next_Base
COLOR_CHANNEL
col
Probe_Type
Strand_FR
Strand_TB
Strand_CO
Infinium_Design_Type
CHR
MAPINFO
Species
Genome_Build
Source_Seq
Forward_Sequence
Top_Sequence
Rep_Num

Data table
ID SPOT_ID Name U AlleleA_ProbeSeq M AlleleB_ProbeSeq Next_Base COLOR_CHANNEL col Probe_Type Strand_FR Strand_TB Strand_CO Infinium_Design_Type CHR MAPINFO Species Genome_Build Source_Seq Forward_Sequence Top_Sequence Rep_Num
cg24739849_BC11 cg24739849_BC11 cg24739849 25690972 TCTCACTCATTATCAAAATCAAACAAAAACACCAAAACTCTAACATTTCA 14657850 TCTCACTCATTATCAAAATCGAACGAAAACGCCAAAACTCTAACGTTTCG A Red R cg R B C 1 chr10 103021543 Human GRCh38 TCTCACTCATTGTCAAAATCGAGCGAAAGCGCCAGAACTCTGGCGTTTCG AGACAGACAATAATGGAGAGGCTGTGAGTATTGAGGGGCAGGGGGAGGAGTGGTCTTACC[CG]AAACGCCAGAGTTCTGGCGCTTTCGCTCGATTTTGACAATGAGTGAGACCTGTAGGGTGA AGACAGACAATAATGGAGAGGCTGTGAGTATTGAGGGGCAGGGGGAGGAGTGGTCTTACC[CG]AAACGCCAGAGTTCTGGCGCTTTCGCTCGATTTTGACAATGAGTGAGACCTGTAGGGTGA 1
cg24739849_BC12 cg24739849_BC12 cg24739849 16709599 TCTCACTCATTATCAAAATCAAACAAAAACACCAAAACTCTAACATTTCA 62672922 TCTCACTCATTATCAAAATCGAACGAAAACGCCAAAACTCTAACGTTTCG A Red R cg R B C 1 chr10 103021543 Human GRCh38 TCTCACTCATTGTCAAAATCGAGCGAAAGCGCCAGAACTCTGGCGTTTCG AGACAGACAATAATGGAGAGGCTGTGAGTATTGAGGGGCAGGGGGAGGAGTGGTCTTACC[CG]AAACGCCAGAGTTCTGGCGCTTTCGCTCGATTTTGACAATGAGTGAGACCTGTAGGGTGA AGACAGACAATAATGGAGAGGCTGTGAGTATTGAGGGGCAGGGGGAGGAGTGGTCTTACC[CG]AAACGCCAGAGTTCTGGCGCTTTCGCTCGATTTTGACAATGAGTGAGACCTGTAGGGTGA 2
cg24739849_BC13 cg24739849_BC13 cg24739849 28630552 TCTCACTCATTATCAAAATCAAACAAAAACACCAAAACTCTAACATTTCA 60729202 TCTCACTCATTATCAAAATCGAACGAAAACGCCAAAACTCTAACGTTTCG A Red R cg R B C 1 chr10 103021543 Human GRCh38 TCTCACTCATTGTCAAAATCGAGCGAAAGCGCCAGAACTCTGGCGTTTCG AGACAGACAATAATGGAGAGGCTGTGAGTATTGAGGGGCAGGGGGAGGAGTGGTCTTACC[CG]AAACGCCAGAGTTCTGGCGCTTTCGCTCGATTTTGACAATGAGTGAGACCTGTAGGGTGA AGACAGACAATAATGGAGAGGCTGTGAGTATTGAGGGGCAGGGGGAGGAGTGGTCTTACC[CG]AAACGCCAGAGTTCTGGCGCTTTCGCTCGATTTTGACAATGAGTGAGACCTGTAGGGTGA 3
cg24825334_BC11 cg24825334_BC11 cg24825334 70798950 AAAACAAAACCAAAAAATACCCAACAAAAACTTATATTCCCCTCAACTCA 65705541 AAAACGAAACCGAAAAATACCCGACGAAAACTTATATTCCCCTCAACTCG T Red R cg R B C 1 chr3 143971366 Human GRCh38 GGGGCGAGGCCGGGGAGTGCCCGACGGGGGCTTGTGTTCCCCTCAGCTCG CACTACTCGAGCCTTTCTCACCGTCTTCCTCACAGGCCCCACCCCCTACCGCGAGGAGCA[CG]AGCTGAGGGGAACACAAGCCCCCGTCGGGCACTCCCCGGCCTCGCCCCACCCCCCAGGCG CACTACTCGAGCCTTTCTCACCGTCTTCCTCACAGGCCCCACCCCCTACCGCGAGGAGCA[CG]AGCTGAGGGGAACACAAGCCCCCGTCGGGCACTCCCCGGCCTCGCCCCACCCCCCAGGCG 1
cg24825334_BC12 cg24825334_BC12 cg24825334 91762246 AAAACAAAACCAAAAAATACCCAACAAAAACTTATATTCCCCTCAACTCA 81784985 AAAACGAAACCGAAAAATACCCGACGAAAACTTATATTCCCCTCAACTCG T Red R cg R B C 1 chr3 143971366 Human GRCh38 GGGGCGAGGCCGGGGAGTGCCCGACGGGGGCTTGTGTTCCCCTCAGCTCG CACTACTCGAGCCTTTCTCACCGTCTTCCTCACAGGCCCCACCCCCTACCGCGAGGAGCA[CG]AGCTGAGGGGAACACAAGCCCCCGTCGGGCACTCCCCGGCCTCGCCCCACCCCCCAGGCG CACTACTCGAGCCTTTCTCACCGTCTTCCTCACAGGCCCCACCCCCTACCGCGAGGAGCA[CG]AGCTGAGGGGAACACAAGCCCCCGTCGGGCACTCCCCGGCCTCGCCCCACCCCCCAGGCG 2
cg24976563_TC11 cg24976563_TC11 cg24976563 27684950 TACACAAACCAAACAATCCAACTCTATAACTACCAATATAACCATTTCCA 74736216 TACACAAACCAAACAATCCGACTCTATAACTACCGATATAACCGTTTCCG T Red R cg F T C 1 chr14 24118429 Human GRCh38 CGGAAACGGCCATATCGGCAGTCATAGAGTCGGATTGTCTGGTCTGTGTA CTGATCTTTACTTACACAGACCAGACAATCCGACTCTATGACTGCCGATATGGCCGTTTC[CG]TAAATTCAAGAGCATCAAGGCCCGCGACGTAGGCTGGAGCGTCTTGGATGTGGCCTTCAC CTGATCTTTACTTACACAGACCAGACAATCCGACTCTATGACTGCCGATATGGCCGTTTC[CG]TAAATTCAAGAGCATCAAGGCCCGCGACGTAGGCTGGAGCGTCTTGGATGTGGCCTTCAC 1
cg24976563_TC12 cg24976563_TC12 cg24976563 4715303 TACACAAACCAAACAATCCAACTCTATAACTACCAATATAACCATTTCCA 47751912 TACACAAACCAAACAATCCGACTCTATAACTACCGATATAACCGTTTCCG T Red R cg F T C 1 chr14 24118429 Human GRCh38 CGGAAACGGCCATATCGGCAGTCATAGAGTCGGATTGTCTGGTCTGTGTA CTGATCTTTACTTACACAGACCAGACAATCCGACTCTATGACTGCCGATATGGCCGTTTC[CG]TAAATTCAAGAGCATCAAGGCCCGCGACGTAGGCTGGAGCGTCTTGGATGTGGCCTTCAC CTGATCTTTACTTACACAGACCAGACAATCCGACTCTATGACTGCCGATATGGCCGTTTC[CG]TAAATTCAAGAGCATCAAGGCCCGCGACGTAGGCTGGAGCGTCTTGGATGTGGCCTTCAC 2
cg24976563_TC13 cg24976563_TC13 cg24976563 48802560 TACACAAACCAAACAATCCAACTCTATAACTACCAATATAACCATTTCCA 35729956 TACACAAACCAAACAATCCGACTCTATAACTACCGATATAACCGTTTCCG T Red R cg F T C 1 chr14 24118429 Human GRCh38 CGGAAACGGCCATATCGGCAGTCATAGAGTCGGATTGTCTGGTCTGTGTA CTGATCTTTACTTACACAGACCAGACAATCCGACTCTATGACTGCCGATATGGCCGTTTC[CG]TAAATTCAAGAGCATCAAGGCCCGCGACGTAGGCTGGAGCGTCTTGGATGTGGCCTTCAC CTGATCTTTACTTACACAGACCAGACAATCCGACTCTATGACTGCCGATATGGCCGTTTC[CG]TAAATTCAAGAGCATCAAGGCCCGCGACGTAGGCTGGAGCGTCTTGGATGTGGCCTTCAC 3
cg25123362_TC11 cg25123362_TC11 cg25123362 87638340 CACATTACTCCTAACATTATACATTTCACTATCCAACTAAAATCTAAACA 95791376 CGCGTTACTCCTAACATTATACGTTTCACTATCCGACTAAAATCTAAACG C Grn G cg R T C 1 chr10 131980230 Human GRCh38 CGCCCAGATCCCAGCCGGACAGTGAAACGCACAATGTCAGGAGTAACGCG CTGTGTAAGTTACATATTGGAGAGAGGACCGAGCCCCCCGGAGCCCCCTCCACCTCCCAG[CG]CCCAGATCCCAGCCGGACAGTGAAACGCACAATGTCAGGAGTAACGCGGCTTCACAACCG CGGTTGTGAAGCCGCGTTACTCCTGACATTGTGCGTTTCACTGTCCGGCTGGGATCTGGG[CG]CTGGGAGGTGGAGGGGGCTCCGGGGGGCTCGGTCCTCTCTCCAATATGTAACTTACACAG 1
cg25164490_TC11 cg25164490_TC11 cg25164490 84671114 AAAAAACACAACTAAACCTTAACAACCAACATAACCCTTCTACAACACCA 30683186 AAAAAACACAACTAAACCTTAACAACCGACATAACCCTTCTACAACGCCG C Grn G cg R T C 1 chr3 141093635 Human GRCh38 CGGCGCTGCAGAAGGGCCATGCCGGCTGCCAAGGCTCAGCTGTGCTTCTC ATGGTGGATTAGTCACAGCCAGTGAAGCTTCCGGTTCTCCAGAGCCACCTTCCCACCCTG[CG]GCGCTGCAGAAGGGCCATGCCGGCTGCCAAGGCTCAGCTGTGCTTCTCTCCCATCATCCC GGGATGATGGGAGAGAAGCACAGCTGAGCCTTGGCAGCCGGCATGGCCCTTCTGCAGCGC[CG]CAGGGTGGGAAGGTGGCTCTGGAGAACCGGAAGCTTCACTGGCTGTGACTAATCCACCAT 1
cg25164490_TC12 cg25164490_TC12 cg25164490 66752171 AAAAAACACAACTAAACCTTAACAACCAACATAACCCTTCTACAACACCA 79712564 AAAAAACACAACTAAACCTTAACAACCGACATAACCCTTCTACAACGCCG C Grn G cg R T C 1 chr3 141093635 Human GRCh38 CGGCGCTGCAGAAGGGCCATGCCGGCTGCCAAGGCTCAGCTGTGCTTCTC ATGGTGGATTAGTCACAGCCAGTGAAGCTTCCGGTTCTCCAGAGCCACCTTCCCACCCTG[CG]GCGCTGCAGAAGGGCCATGCCGGCTGCCAAGGCTCAGCTGTGCTTCTCTCCCATCATCCC GGGATGATGGGAGAGAAGCACAGCTGAGCCTTGGCAGCCGGCATGGCCCTTCTGCAGCGC[CG]CAGGGTGGGAAGGTGGCTCTGGAGAACCGGAAGCTTCACTGGCTGTGACTAATCCACCAT 2
cg24781064_BC11 cg24781064_BC11 cg24781064 39643854 CAAAATCAAATCTAAACTCCACAAAATTTTAACATAATTATAAAACTACA 44720211 CGAAATCGAATCTAAACTCCGCGAAATTTTAACGTAATTATAAAACTACG C Grn G cg F B C 1 chr19 54201112 Human GRCh38 CGAGATCGGATCTGGGCTCCGCGAGGTTTTGGCGTAGTTGTGGGACTGCG AGGTTATTCTCGCGAGATCGGATCTGGGCTCCGCGAGGTTTTGGCGTAGTTGTGGGACTG[CG]CAGGCGCCGTTTGGATCCCTTACGCTCACACTTCTCTCCCGCGCAGGCGCAGACGGGGAA TTCCCCGTCTGCGCCTGCGCGGGAGAGAAGTGTGAGCGTAAGGGATCCAAACGGCGCCTG[CG]CAGTCCCACAACTACGCCAAAACCTCGCGGAGCCCAGATCCGATCTCGCGAGAATAACCT 1
cg24781064_BC12 cg24781064_BC12 cg24781064 52625943 CAAAATCAAATCTAAACTCCACAAAATTTTAACATAATTATAAAACTACA 85611168 CGAAATCGAATCTAAACTCCGCGAAATTTTAACGTAATTATAAAACTACG C Grn G cg F B C 1 chr19 54201112 Human GRCh38 CGAGATCGGATCTGGGCTCCGCGAGGTTTTGGCGTAGTTGTGGGACTGCG AGGTTATTCTCGCGAGATCGGATCTGGGCTCCGCGAGGTTTTGGCGTAGTTGTGGGACTG[CG]CAGGCGCCGTTTGGATCCCTTACGCTCACACTTCTCTCCCGCGCAGGCGCAGACGGGGAA TTCCCCGTCTGCGCCTGCGCGGGAGAGAAGTGTGAGCGTAAGGGATCCAAACGGCGCCTG[CG]CAGTCCCACAACTACGCCAAAACCTCGCGGAGCCCAGATCCGATCTCGCGAGAATAACCT 2
cg25259697_BC11 cg25259697_BC11 cg25259697 52772212 CTACTCTCATCCATTTCTCTACAAATACACCCAAAAACCAAAAAACATCA 5782939 CTACTCTCATCCGTTTCTCTACAAATACGCCCAAAAACCAAAAAACATCG A Red R cg F B C 1 chr7 1949725 Human GRCh38 CTGCTCTCATCCGTTTCTCTGCAGATACGCCCAGGAACCAAAGGACATCG TCCTCTAAAAAGCTGCTCTCATCCGTTTCTCTGCAGATACGCCCAGGAACCAAAGGACAT[CG]GTCCCTTGGACGCAGTGCCTGCAGCAGCGGCTGCTTGGGGAGACCTCCATCGTGCCATGT ACATGGCACGATGGAGGTCTCCCCAAGCAGCCGCTGCTGCAGGCACTGCGTCCAAGGGAC[CG]ATGTCCTTTGGTTCCTGGGCGTATCTGCAGAGAAACGGATGAGAGCAGCTTTTTAGAGGA 1
cg25259697_BC12 cg25259697_BC12 cg25259697 31778207 CTACTCTCATCCATTTCTCTACAAATACACCCAAAAACCAAAAAACATCA 12705891 CTACTCTCATCCGTTTCTCTACAAATACGCCCAAAAACCAAAAAACATCG A Red R cg F B C 1 chr7 1949725 Human GRCh38 CTGCTCTCATCCGTTTCTCTGCAGATACGCCCAGGAACCAAAGGACATCG TCCTCTAAAAAGCTGCTCTCATCCGTTTCTCTGCAGATACGCCCAGGAACCAAAGGACAT[CG]GTCCCTTGGACGCAGTGCCTGCAGCAGCGGCTGCTTGGGGAGACCTCCATCGTGCCATGT ACATGGCACGATGGAGGTCTCCCCAAGCAGCCGCTGCTGCAGGCACTGCGTCCAAGGGAC[CG]ATGTCCTTTGGTTCCTGGGCGTATCTGCAGAGAAACGGATGAGAGCAGCTTTTTAGAGGA 2
cg25299011_BC11 cg25299011_BC11 cg25299011 13644596 ACTAAATAAAACCAAAAAATACAAAATCCCAAATCTCCTCACACAAAACA 18776147 ACTAAATAAAACCGAAAAATACGAAATCCCAAATCTCCTCGCACGAAACG A Red R cg R B C 1 chr11 89730369 Human GRCh38 ACTGGGTAGGACCGGAGGGTGCGGGGTCCCAGGTCTCCTCGCACGGAGCG GCGTCCTGTCACTCCGCCCCGCCAGCTACCCTCCCCTGAGCCCGGGTGCCCGGCTTAGGC[CG]CTCCGTGCGAGGAGACCTGGGACCCCGCACCCTCCGGTCCTACCCAGTGCTTCTGCCCTG GCGTCCTGTCACTCCGCCCCGCCAGCTACCCTCCCCTGAGCCCGGGTGCCCGGCTTAGGC[CG]CTCCGTGCGAGGAGACCTGGGACCCCGCACCCTCCGGTCCTACCCAGTGCTTCTGCCCTG 1
cg25350872_BC11 cg25350872_BC11 cg25350872 58720136 ACAACCAAAAACAAATATAATAAAATAAACCAAAAACAATATCTACATCA 94647354 GCAACCAAAAACGAATATAATAAAATAAACCGAAAACAATATCTACATCG A Red R cg R B C 1 chr7 159023458 Human GRCh38 GCAGCCAGGGGCGGGTGTGGTGAGGTGGGCCGGGAGCAGTGTCTGCATCG CAGACGCTGCTCCCGGCCCACCTCACCACACCCGCCCCCGGCTGTGCCCACAGTCCCACC[CG]ATGCAGACACTGCTCCCGGCCCACCTCACCACACCCGCCCCTGGCTGCGCCACAGTCCCA CAGACGCTGCTCCCGGCCCACCTCACCACACCCGCCCCCGGCTGTGCCCACAGTCCCACC[CG]ATGCAGACACTGCTCCCGGCCCACCTCACCACACCCGCCCCTGGCTGCGCCACAGTCCCA 1
cg22477269_BC11 cg22477269_BC11 cg22477269 16746152 CACTAACACTAACTCCAAACTAACAATCACCAAATTCAAATCAATTACCA 79737136 CACTAACGCTAACTCCAAACTAACAATCACCAAATTCGAATCAATTACCG A Red R cg R B C 1 chr17 37407495 Human GRCh38 CACTGGCGCTAGCTCCAAACTAACAATCGCCAAATTCGAATCAGTTACCG TGCGCCTTTCCTCCTCCCAACGTGGACTCCTGCCCGGCGAAGTGCCTCACTTCCTTCTCC[CG]GTAACTGATTCGAATTTGGCGATTGTTAGTTTGGAGCTAGCGCCAGTGTTTCCACGGAAG TGCGCCTTTCCTCCTCCCAACGTGGACTCCTGCCCGGCGAAGTGCCTCACTTCCTTCTCC[CG]GTAACTGATTCGAATTTGGCGATTGTTAGTTTGGAGCTAGCGCCAGTGTTTCCACGGAAG 1
cg25427524_TC11 cg25427524_TC11 cg25427524 51804230 AACACCCCTAAAAAACAACAACAAAACCTACAAATACTCTTCTCCAACCA 76766948 AACACCCCTAAAAAACAACAACGAAACCTACAAATACTCTTCTCCAACCG A Red R cg F T C 1 chr10 38450891 Human GRCh38 CGGCTGGAGAAGAGCATCTGCAGGCCCCGCTGTTGCCTCCCAGGGGTGTC GCTGGGCCTGGAGACACCCCTGGGAGGCAACAGCGGGGCCTGCAGATGCTCTTCTCCAGC[CG]GAGCTGGGACTGTTCAGGCTACTGGTGGCGGGATGTGGGCCTGAGAGCTTGGTTGCAGAA GCTGGGCCTGGAGACACCCCTGGGAGGCAACAGCGGGGCCTGCAGATGCTCTTCTCCAGC[CG]GAGCTGGGACTGTTCAGGCTACTGGTGGCGGGATGTGGGCCTGAGAGCTTGGTTGCAGAA 1
cg25427524_TC12 cg25427524_TC12 cg25427524 21682908 AACACCCCTAAAAAACAACAACAAAACCTACAAATACTCTTCTCCAACCA 68645842 AACACCCCTAAAAAACAACAACGAAACCTACAAATACTCTTCTCCAACCG A Red R cg F T C 1 chr10 38450891 Human GRCh38 CGGCTGGAGAAGAGCATCTGCAGGCCCCGCTGTTGCCTCCCAGGGGTGTC GCTGGGCCTGGAGACACCCCTGGGAGGCAACAGCGGGGCCTGCAGATGCTCTTCTCCAGC[CG]GAGCTGGGACTGTTCAGGCTACTGGTGGCGGGATGTGGGCCTGAGAGCTTGGTTGCAGAA GCTGGGCCTGGAGACACCCCTGGGAGGCAACAGCGGGGCCTGCAGATGCTCTTCTCCAGC[CG]GAGCTGGGACTGTTCAGGCTACTGGTGGCGGGATGTGGGCCTGAGAGCTTGGTTGCAGAA 2

Total number of rows: 944621

Table truncated, full table size 425617 Kbytes.




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