5ZJI: Structure of photosystem I supercomplex with light-harvesting complexes I and II

PDB ID: 5ZJIDownload
MMDB ID: 163547
PDB Deposition Date: 2018/3/20
Updated in MMDB: 2019/11
Experimental Method:
electron microscopy
Resolution: 3.3  Å
Source Organism:
Zea mays subsp. mays▼
Similar Structures:
Biological Unit for 5ZJI: 21-meric; determined by author
Molecular Components in 5ZJI
Label Count Molecule
Proteins (21 molecules)
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A1
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A2
Molecule annotation
1
Photosystem I Subunit VII
Molecule annotation
1
Photosystem I Reaction Center Subunit II
Molecule annotation
1
Photosystem I Reaction Center Subunit IV a
Molecule annotation
1
Photosystem I Reaction Center Subunit III
Molecule annotation
1
Photosystem I Reaction Center Subunit V
Molecule annotation
1
Photosystem I Reaction Center Subunit VI, Chloroplastic
Molecule annotation
1
Photosystem I Reaction Center Subunit Viii
Molecule annotation
1
Photosystem I Reaction Center Subunit IX
Molecule annotation
1
Photosystem I Reaction Center Subunit Psak
Molecule annotation
1
Photosystem I Reaction Center Subunit XI
Molecule annotation
1
16kda Membrane Protein
Molecule annotation
1
Photosystem I Reaction Center Subunit N
Molecule annotation
2
Chlorophyll A-B Binding Protein 1, Chloroplastic
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
Chemicals and Non-standard biopolymers (271 molecules)
1
30
CHLOROPHYLL BCHLOROPHYLL B
2
171
CHLOROPHYLL ACHLOROPHYLL A
3
11
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
4
7
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
5
26
BETA-CAROTENEBETA-CAROTENE
6
8
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
7
5
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
8
1
CHLOROPHYLL A ISOMERCHLOROPHYLL A ISOMER
9
2
PHYLLOQUINONEPHYLLOQUINONE
10
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
11
2
DODECYL-ALPHA-D-MALTOSIDEDODECYL-ALPHA-D-MALTOSIDE
12
2
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
13
3
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303