8D87: Fitted crystal structure of the homotrimer of fusion glycoprotein E1 from SFV into subtomogram averaged CHIKV E1 glycoprotein density

PDB ID: 8D87Download
MMDB ID: 219869
PDB Deposition Date: 2022/6/8
Updated in MMDB: 2022/12
Experimental Method:
electron microscopy
Resolution: 27.2  Å
Source Organism:
Similar Structures:
Biological Unit for 8D87: trimeric; determined by author
Molecular Components in 8D87
Label Count Molecule
Proteins (3 molecules)
3
Spike Glycoprotein E1
Molecule annotation
Chemicals and Non-standard biopolymers (23 molecules)
1
7
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
beta-D-mannopyranosebeta-D-mannopyranose
3
1
beta-L-fucopyranosebeta-L-fucopyranose
4
1
2-acetamido-2-deoxy-alpha-D-glucopyranose2-acetamido-2-deoxy-alpha-D-glucopyranose
5
2
alpha-D-mannopyranosealpha-D-mannopyranose
6
1
alpha-L-fucopyranosealpha-L-fucopyranose
7
3
BROMIDE IONBROMIDE ION
8
4
HOLMIUM ATOMHOLMIUM ATOM
9
1
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303