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2FRX:
Crystal structure of YebU, a m5C RNA methyltransferase from E.coli
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PDB ID:
2FRX
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MMDB ID:
40860
PDB Deposition Date:
2006/1/20
Updated in MMDB:
2012/11
Experimental Method:
x-ray diffraction
Resolution:
2.9 Å
Source Organism:
Escherichia coli
Similar Structures:
VAST+
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Molecular Graphic
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Interactions
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A
A: Hypothetical protein yebU
B
B: Hypothetical protein yebU
C
C: Hypothetical protein yebU
D
D: Hypothetical protein yebU
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Nucleotide
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Format:
ASN.1 (Cn3D)
PDB
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Data Set:
alpha-Carbons
Single 3D structure
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Molecular Components in 2FRX
Label
Count
Molecule
Proteins (4 molecules)
A
B
C
D
4
Hypothetical Protein Yebu
(Gene symbol:
rsmF
)
4 Proteins
SS Diagram
3D Domains
1
100
200
300
400
479
479 residues, click to see VAST similar structures.
helix 10-19
helix 27-34
helix 50-57
helix 105-113
helix 130-139
helix 155-165
helix 215-235
helix 255-264
helix 334-347
helix 399-406
helix 418-426
strand 40-44
strand 72-75
strand 96-100
strand 119-125
strand 143-150
strand 169-175
strand 189-195
strand 239-248
strand 268-272
strand 284-287
strand 288-295
strand 301-311
strand 329-332
strand 354-361
strand 362-369
strand 381-392
strand 393-398
strand 413-416
strand 428-431
strand 439-445
strand 450-457
strand 458-462
Domain 1 (24-37): click to see VAST similar structures
1
Domain 2 (38-102): click to see VAST similar structures
2
Domain 1 (103-409): click to see VAST similar structures
1
Domain 3 (410-479): click to see VAST similar structures
3
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Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
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