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SRX2624972: Empedobacter sp. UBA5039
1 ILLUMINA (Illumina MiSeq) run: 7,491 spots, 229,918 bases, 166,307b downloads

Design: BWA (BWA-MEM) mapping of Empedobacter sp. UBA5039 using version 0.7.12-r1039 and assembled with CLC de novo assembler 4.4.1 with a genome coverage of 20.84
Submitted by: University of Queensland
Study: Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substantially flesh out the tree of life
show Abstracthide Abstract
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing throughput and computational techniques that allow for the cultivation-independent recovery of high-quality bacterial and archaeal genomes directly from metagenomic data. In this study, we recovered 7,903 uncultivated genomes from >1,000 metagenomes available from the Sequence Read Archive. These genomes increase the phylogenetic diversity of current archaeal and bacterial genome trees by >30%.
Sample: Uncultivated Empedobacter sp. UBA5039 genome recovered from SRX823471
SAMN06455471 • SRS2034929 • All experiments • All runs
Library:
Name: SRX823471.b4.bam
Instrument: Illumina MiSeq
Strategy: OTHER
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 7,491 spots, 229,918 bases, 166,307b
Run# of Spots# of BasesSizePublished
SRR53257777,491229,918166,307b2017-09-14

ID:
3801118

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