Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX566790: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-318742' containing sample 'VET0314R'
4 ILLUMINA (Illumina HiSeq 2000) runs: 15.7M spots, 3.2G bases, 1.5Gb downloads

UUID: 91c05ca3-9b04-448e-a942-bd6fc7435493

Design: Illumina sequencing of Staphylococcus aureus VET0314R via random selection

Submitted by: Broad Institute (BI)

Study: MRSA ST398

PRJNA228670 • SRP042736 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus VET0314R

SAMN02404162 • SRS626665 • All experiments • All runs

Organism: Staphylococcus aureus VET0314R

Library:

Name: Pond-318742

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 471503.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5CLFB

material_type: DNA:DNA Somatic

product_order: PDO-2557

product_part_number: P-WG-0004

project: G55392

research_project: RP-513

root_sample_id: SM-4Q5Q3

sample_id: SM-5CLFB

work_request: 39368

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-02-01 14:58:37.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 4 runs, 15.7M spots, 3.2G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR1328179	3,919,505	791.7M	390.7Mb	2014-06-03
SRR1328181	3,892,712	786.3M	384.4Mb	2014-06-03
SRR1342357	3,925,341	792.9M	388.7Mb	2014-06-05
SRR1344789	3,956,896	799.3M	390Mb	2014-06-06

ID:: 809607

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity