Whole-genome sequencing of pathogens from a hospital setting - SRA

SRX26706775: Whole-genome sequencing of pathogens from a hospital setting
1 ILLUMINA (Illumina MiSeq) run: 826,806 spots, 458.9M bases, 285.5Mb downloads

Design: Illumina library prep using Nextera DNA UD indices

Submitted by: Brigham and Women's Hospital

Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA

PRJNA278886 • SRP056445 • All experiments • All runs

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The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.

Sample:

SAMN44699186 • SRS23197924 • All experiments • All runs

Organism: Enterococcus faecium

Library:

Name: BWH_407_E_faem

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 826,806 spots, 458.9M bases, 285.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR31329293	826,806	458.9M	285.5Mb	2024-11-13

ID:: 36083177

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