Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

Links from BioProject

SRX567395: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-318333' containing sample 'VET0161R'
2 ILLUMINA (Illumina HiSeq 2000) runs: 5.6M spots, 1.1G bases, 552.8Mb downloads

UUID: d6d8ebff-1351-4cef-b18a-3e7fff912fd6

Design: Illumina sequencing of Staphylococcus aureus VET0161R via random selection

Submitted by: Broad Institute (BI)

Study: MRSA ST398

PRJNA228563 • SRP042833 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus VET0161R

SAMN02404055 • SRS626901 • All experiments • All runs

Organism: Staphylococcus aureus VET0161R

Library:

Name: Pond-318333

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 469966.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5C8QO

material_type: DNA:DNA Somatic

product_order: PDO-2557

product_part_number: P-WG-0004

project: G55094

research_project: RP-513

root_sample_id: SM-4P946

sample_id: SM-5C8QO

work_request: 39365

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-02-09 14:32:02.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 5.6M spots, 1.1G bases, 552.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR1329267	2,748,433	555.2M	271.9Mb	2014-06-03
SRR1342331	2,819,249	569.5M	280.9Mb	2014-06-05

ID:: 810212

SRA

Sequence Read Archive

Result Filters

Send to:

Links from BioProject

Supplemental Content

Related information

Recent activity