Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

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SRX566904: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-318260' containing sample 'VET0050R'
2 ILLUMINA (Illumina HiSeq 2000) runs: 5.2M spots, 1.1G bases, 521.9Mb downloads

UUID: 23b46da6-763c-4c55-9ca3-35cfbd81eb7d

Design: Illumina sequencing of Staphylococcus aureus VET0050R via random selection

Submitted by: Broad Institute (BI)

Study: MRSA ST398

PRJNA228480 • SRP042767 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus VET0050R

SAMN02403973 • SRS626779 • All experiments • All runs

Organism: Staphylococcus aureus VET0050R

Library:

Name: Pond-318260

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 469893.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5C8M9

material_type: DNA:DNA Somatic

product_order: PDO-2557

product_part_number: P-WG-0004

project: G55015

research_project: RP-513

root_sample_id: SM-4P91T

sample_id: SM-5C8M9

work_request: 39365

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-02-09 14:32:02.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 5.2M spots, 1.1G bases, 521.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR1328301	2,660,547	537.4M	265.6Mb	2014-06-03
SRR1342139	2,589,347	523M	256.3Mb	2014-06-05

ID:: 809721

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