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SRX9461289: Bioreactor producing medium/long chain fatty acids
1 ILLUMINA (Illumina MiSeq) run: 9.1M spots, 2.7G bases, 1.7Gb downloads

Design: Library concentrations were measured in triplicate using the Qubit dsDNA HS kit and library size estimated usingTapeStation with D1000 HS ScreenTape. The sequencing libraries were pooled in equimolar concentrations anddiluted to 4 nM. The samples were paired end sequenced (2x301bp) on a MiSeq (Illumina, USA) using a MiSeqReagent kit v3, 600 cycles (Illumina, USA) following the standard guidelines for preparing and loading sampleson the MiSeq.
Submitted by: Italian National Research Council (CNR)
Study: Direct Conversion of Food Waste Extract into Caproate: Metagenomics Assessment of Chain Elongation Process
show Abstracthide Abstract
In a circular economy strategy, waste resources can be used for the biological production of high added-value substances, such as medium chain fatty acids (MCFAs), thus minimising waste and favouring a sustainable process. This study investigates single-stage fermentation processes for the production of MCFAs in a semi-continuous reactor treating the extract of real food waste (FW), without the addition of external electron donors. Two sequential acidogenic fermentation tests were carried out at an organic loading rate (OLR) of 5 and 15 gCOD L-1d-1 with a hydraulic retention time of 4 days and pH controlled at 6 +/- 0.2. The highest level of caproate (4.8 g L-1) was observed at OLR of 15 gCOD L-1d-1 with a microbiome mainly composed by lactate-producing Actinomyces, Atopobium, and Olsenella species and caproate-producing Pseudoramibacter. Metagenomic analysis revealed the presence of key enzymes for the production of lactate, such as lactate dehydrogenase and pyruvate ferredoxin oxidoreductase, as well as several enzymes involved in the reverse B-oxidation pathway, thus suggesting the occurrence of a lactate-based chain elongation process.
Sample: Metagenome of medium/long chain fatty acids producing bioreactor
SAMN16707725 • SRS7673512 • All experiments • All runs
Library:
Name: VFA_OLR15_R1
Instrument: Illumina MiSeq
Strategy: WGS
Source: METAGENOMIC
Selection: unspecified
Layout: PAIRED
Runs: 1 run, 9.1M spots, 2.7G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR130101039,126,8782.7G1.7Gb2021-02-15

ID:
12358638

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