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SRX1067272: GSM1716919: X10_53_2; Thermosynechococcus elongatus BP-1; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 24.2M spots, 2.4G bases, 1.1Gb downloads

Submitted by: NCBI (GEO)
Study: RNA-seq analysis of gene expression after exposure to hot and cold stress in WT cells of Thermosynechococcus elongatus, BP-1
show Abstracthide Abstract
To investigate the temperature response in Thermosynechococcus elongatus (BP-1) and look for coordinated control in the cell, transcriptomes of BP-1 were measured using RNAseq following exposure to low and high temperature stress. The amount of temperature increase (53 to 61 °C) and decrease (53 to 45 °C) was based on the allowable range of continuous growth. The cells were growth in three separate culture tubes under LED light in a temperature-controlled submersible chamber under batch growth conditions. The temperature shift was conducted once the cells reached their target concentration of 1.5E7 cells/ml. A control experiment was conducted, in which the temperature remained at 53 °C, ensuring that the cellular physiology and light attenuation were comparable and that the only difference between the hot and cold treatments relative to the control treatment was temperature. Overall design: Heat stress 61°C and cold stress 45°C samples taken at time 0, 0.5hr, 3hr, 10hr, and 24hr. A control experiment, in which the temperature remained at 53 °C samples taken at time 3hr, 10hr, and 24hr. Each sample timepoint consisted of three biological replicates.
Sample: X10_53_2
SAMN03784655 • SRS967168 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Frozen cell pellets were mixed in Trizol preheated to 65 °C then incubated 15 minutes for RNA extraction. The sample was solvent separated with chloroform, purified on an miRNEasy kit, processed with TurboDNAse, and cleaned up with an miRNEasy kit RNA libraries were prepared for sequencing using standard Illumina protocols RNA-Seq, analyzed as single-end 100 bp, ≥ 12 million reads on an Illumina HiSeq 2500.
Experiment attributes:
GEO Accession: GSM1716919
Links:
Runs: 2 runs, 24.2M spots, 2.4G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR207210012,038,6391.2G536.7Mb2015-06-23
SRR207210112,118,8801.2G571.6Mb2015-06-23

ID:
1546877

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