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SRX4476977: FWSconsortium, WGS of E. coli: Water; water - river
1 ILLUMINA (Illumina MiSeq) run: 700,607 spots, 417.8M bases, 289.3Mb downloads

Design: MasterPure Complete DNA purification kit; Covaris E210 physical fragmentation; TruSeq DNA library kit 2x250bp paired end on Illumina Miseq
Submitted by: NML_bioinformatics (NML_bioinfo)
Study: Food and Water Safety consortium
show Abstracthide Abstract
The food and water safety pilot project is a comprehensive strategy that integrates multidisciplinary components from diverse federal science sources to address two main goals. The first is to enhance food and water safety by developing genomics-based methods for pathogen isolation, detection and characterisation. The second goal is to develop a federally integrated system to manage, store and provide open access to genomic data related to food and water borne pathogens. The model organisms for this study are Shiga-toxin Producing Escherchia coli (STEC) and Salmonella Enteritidis from Environmental, animal husbandry, food samples, and medical isolates.
Sample: stx1
SAMN08797214 • SRS3602246 • All experiments • All runs
Library:
Name: FWSEC0342
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 700,607 spots, 417.8M bases, 289.3Mb
Run# of Spots# of BasesSizePublished
SRR7612270700,607417.8M289.3Mb2019-01-22

ID:
6062868

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