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SRX4476999: FWSconsortium, WGS of E. coli: Domesticated, Livestock; Bovine; animal manure; agricultural - farm
1 ILLUMINA (Illumina MiSeq) run: 692,056 spots, 415.7M bases, 269.8Mb downloads

Design: MasterPure Complete DNA purification kit; Covaris E210 physical fragmentation; TruSeq DNA library kit 2x250bp paired end on Illumina Miseq
Submitted by: NML_bioinformatics (NML_bioinfo)
Study: Food and Water Safety consortium
show Abstracthide Abstract
The food and water safety pilot project is a comprehensive strategy that integrates multidisciplinary components from diverse federal science sources to address two main goals. The first is to enhance food and water safety by developing genomics-based methods for pathogen isolation, detection and characterisation. The second goal is to develop a federally integrated system to manage, store and provide open access to genomic data related to food and water borne pathogens. The model organisms for this study are Shiga-toxin Producing Escherchia coli (STEC) and Salmonella Enteritidis from Environmental, animal husbandry, food samples, and medical isolates.
Sample: stx1a
SAMN08797170 • SRS3602270 • All experiments • All runs
Library:
Name: FWSEC0287
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 692,056 spots, 415.7M bases, 269.8Mb
Run# of Spots# of BasesSizePublished
SRR7612248692,056415.7M269.8Mb2019-01-22

ID:
6062890

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