U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

ERX1660771: Illumina MiSeq paired end sequencing
1 ILLUMINA (Illumina MiSeq) run: 2.2M spots, 702.7M bases, 413.1Mb downloads

Submitted by: IZSLER (Istituto Zooprofilattico Sperimentale della Lombar)
Study: Illumina Miseq genome sequencing of Salmonella enterica subsp. enterica serovar Typhimurium monophasic variant 4,[5],12:i:– isolates associated to a food toxinfection occurred in Piacenza, Northen Italy in 2013.
show Abstracthide Abstract
From July to November 2013 more than one hundred human cases of salmonellosis by Salmonella Typhimurium Monophasic variant were diagnosed in Piacenza and linked to pork-meat consumption. Epidemiological studies indicated that pork meat from a local producer was the main cause of the outbreak, while other producer/ pork breeders might have been implicated. PFGE typing detected that all human and the majority of food isolates belonged to the STYMXB.0131 genotype. To highlight the true epidemiological dynamic of this outbreak,a selection of human and food isolates associated with the Outbreak were sequenced using an Illumina MiSeq sequencer with a 2x250 pair-end run. Library preparation was performed using Illumina Nextera XT kits.
Sample: Whole Genome Sequencing of Salmonella enterica subsp. enterica serovar Typhimurium monophasic variant 4,[5],12:i:-
SAMEA2822427 • ERS569597 • All experiments • All runs
Library:
Name: unspecified
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Nextera XT Illumina
Runs: 1 run, 2.2M spots, 702.7M bases, 413.1Mb
Run# of Spots# of BasesSizePublished
ERR15901832,216,770702.7M413.1Mb2017-10-04

ID:
4558711

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...