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SRX2747157: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Typhimurium by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 697,051 spots, 331.9M bases, 208.7Mb downloads

External Id: EXT00255945
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Hawaii State Department of Health - HSLD
PRJNA274995 • SRP056359 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Salmonella enterica as part of the US Food and Drug Administration's WGS surveillance effort for the rapid detection of foodborne illness outbreaks.
Sample:
SAMN06678041 • SRS2133460 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Typhimurium
Library:
Name: Salmonella enterica subsp. enterica serovar Typhimurium Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Typhimurium.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 697,051 spots, 331.9M bases, 208.7Mb
Run# of Spots# of BasesSizePublished
SRR5459144697,051331.9M208.7Mb2017-04-19

ID:
3956035

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