U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX2629297: Pseudomonas stutzeri UBA1286
1 ILLUMINA (Illumina HiSeq 2500) run: 4.5M spots, 890M bases, 404.7Mb downloads

Design: BWA (BWA-MEM) mapping of Pseudomonas stutzeri UBA1286 using version 0.7.12-r1039 and assembled with CLC de novo assembler 4.4.1 with a genome coverage of 171.48
Submitted by: University of Queensland
Study: Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substantially flesh out the tree of life
show Abstracthide Abstract
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing throughput and computational techniques that allow for the cultivation-independent recovery of high-quality bacterial and archaeal genomes directly from metagenomic data. In this study, we recovered 7,903 uncultivated genomes from >1,000 metagenomes available from the Sequence Read Archive. These genomes increase the phylogenetic diversity of current archaeal and bacterial genome trees by >30%.
Sample: Uncultivated Pseudomonas stutzeri UBA1286 genome recovered from SRX822736
SAMN06452549 • SRS2039144 • All experiments • All runs
Library:
Name: SRX822736.b1.bam
Instrument: Illumina HiSeq 2500
Strategy: OTHER
Source: METAGENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 4.5M spots, 890M bases, 404.7Mb
Run# of Spots# of BasesSizePublished
SRR53302744,482,070890M404.7Mb2017-09-14

ID:
3806872

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...