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ERX1806004: Illumina HiSeq 2000 paired end sequencing
1 ILLUMINA (Illumina HiSeq 2000) run: 6.6M spots, 3.3G bases, 1.6Gb downloads

Submitted by: Unversidad de Valparaiso
Study: The whole genome of the hydrocarbon-degrading biosurfactant producer marine bacterium Cobetia sp. strain MM1IDA2H-1
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Cobetia sp. strain MM1IDA2H-1 is a hydrocarbon-degrading biosurfactant producer marine bacterium (HDMB) isolated from seawater samples obtained form Pacific Ocean in Chile. The strain MM1IDA2H-1 uses dibenzothiophene (DBT) as the sole carbon and energy source, shares the highest sequence similarity to the strain Cobetia marina DSM 4741, nevertheless, strain MM1IDA2H-1 showed phenotypic differences. Since the strain Cobetia sp. MM1IDA2H-1 with specific requirement of sodium to grow and able to use DBT as the sole carbon, we propose that this microorganism as a hydrocarbon-degrading bacterium indigenous to marine ecosystem. Cobetia sp. strain MM1IDA2H-1 produces biosurfactants in response to hydrocarbons or biological competitors. The genome of Cobetia sp. MM1IDA2H-1 was sequenced, processed, assembled and annotated for comprehensive applied studies.
Sample: hydrocarbon-degrading biosurfactant producer marine bacterium Cobetia sp. strain
SAMEA4553727 • ERS1452906 • All experiments • All runs
Organism: Cobetia marina
Library:
Name: unspecified
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 6.6M spots, 3.3G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
ERR17362396,612,5743.3G1.6Gb2017-02-09

ID:
3683816

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