U.S. flag

An official website of the United States government

Links from BioSample

SRX2179076: Whole genome shotgun sequencing of Escherichia coli by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 813,376 spots, 360.2M bases, 234.2Mb downloads

External Id: EXT00216680
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Florida Department of Health, University of Florida
show Abstracthide Abstract
Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events. Comparative genomics using Illumina sequencing
Sample:
SAMN05789710 • SRS1704310 • All experiments • All runs
Library:
Name: Escherichia coli Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli.
Spot descriptor:
forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 813,376 spots, 360.2M bases, 234.2Mb
Run# of Spots# of BasesSizePublished
SRR4271485813,376360.2M234.2Mb2016-09-20

ID:
3174292

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.