U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX2200156: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Muenster by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 811,321 spots, 380.7M bases, 210Mb downloads

External Id: EXT00218479
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Hawaii State Department of Health - HSLD
PRJNA274995 • SRP056359 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Salmonella enterica as part of the US Food and Drug Administration's WGS surveillance effort for the rapid detection of foodborne illness outbreaks.
Sample:
SAMN05736203 • SRS1719915 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Muenster
Library:
Name: Salmonella enterica subsp. enterica serovar Muenster Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Muenster.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 811,321 spots, 380.7M bases, 210Mb
Run# of Spots# of BasesSizePublished
SRR4308510811,321380.7M210Mb2016-09-29

ID:
3232646

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...