U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX2385131: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Enteritidis by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 2.7M spots, 805.8M bases, 378.1Mb downloads

External Id: EXT00227967
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration
PRJNA186035 • SRP018785 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN05414409 • SRS1824613 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Enteritidis
Library:
Name: Salmonella enterica subsp. enterica serovar Enteritidis Nextera XT shotgun
Instrument: NextSeq 500
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Enteritidis.
Spot descriptor:
1  forward151  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10Bcl2fastq2.1
Runs: 1 run, 2.7M spots, 805.8M bases, 378.1Mb
Run# of Spots# of BasesSizePublished
SRR50647652,728,367805.8M378.1Mb2016-11-30

ID:
3473297

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...