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SRX2037339: Whole genome shotgun sequencing of Escherichia coli by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 636,801 spots, 303.9M bases, 187.1Mb downloads

External Id: EXT00210410
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Texas Department of State Health Services
show Abstracthide Abstract
Whole genome sequencing of cultured Escherichia coli as part of the FDA GenomeTrakr surveillance project for rapid source tracking of foodborne illness outbreaks.
Sample:
SAMN05371124 • SRS1631098 • All experiments • All runs
Library:
Name: Escherichia coli Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli.
Spot descriptor:
forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 636,801 spots, 303.9M bases, 187.1Mb
Run# of Spots# of BasesSizePublished
SRR4046447636,801303.9M187.1Mb2016-08-22

ID:
2946559

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