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SRX1808436: Whole genome shotgun sequencing of Escherichia coli by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 511.9M bases, 323.8Mb downloads

External Id: EXT00189611
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Texas Department of State Health Services
PRJNA284275 • SRP061878 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Escherichia coli as part of the FDA GenomeTrakr surveillance project for rapid source tracking of foodborne illness outbreaks.
Sample:
SAMN05171462 • SRS1473169 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: Escherichia coli Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.1M spots, 511.9M bases, 323.8Mb
Run# of Spots# of BasesSizePublished
SRR36065831,076,962511.9M323.8Mb2016-05-30

ID:
2585236

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