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SRX27283270: RNA-Seq of Pseudomonas sp.
1 ILLUMINA (Illumina NovaSeq X) run: 32.8M spots, 8G bases, 2.3Gb downloads

Design: RNA libraries were prepared using CORALL Total RNA-seq Library Prep Kit with Unique Dual Indices with RiboCop HMRv2 rRNA Depletion Kit (Lexogen). cDNA was synthesized: the 3 ends of first-strand cDNA fragments were ligated with a linker containing Illumina-compatible P5 sequences and Unique Molecular Identifiers (UMIs). During the following steps of second strand cDNA synthesis and ds cDNA amplification, i7 and i5 indices as well as complete adapter sequences required for cluster generation were added. Sequencing was carried out on NovaSeq X 10B (Illumina), 2/150 bp reads.
Submitted by: Northern Illinois University
Study: An environmental isolate of Pseudomonas, 20EI1, reduces Aspergillus flavus growth
show Abstracthide Abstract
we identified a promising new isolate of Pseudomonas spp., 20EI1, and observed that it is able to reduce the growth of A. flavus. Furthermore, we determined that this growth inhibition is iron-dependent. Expression of iron-related genes was altered in the presence of the bacteria and genes involved in the production of aflatoxin were down-regulated. Iron supplementation partially reestablished their expression. Expression of other secondary metabolite (SM) genes was also reduced by the bacteria, including genes of clusters involved in cyclopiazonic acid, kojic acid and imizoquin biosynthesis, while genes of the cluster corresponding to aspergillicin, a siderophore, were upregulated.
Sample:
SAMN46120624 • SRS23726571 • All experiments • All runs
Library:
Name: ACA050223_010
Instrument: Illumina NovaSeq X
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA_oligo_dT
Layout: SINGLE
Runs: 1 run, 32.8M spots, 8G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR3192585532,772,8708G2.3Gb2025-01-08

ID:
36814280

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