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SRX26868873: small RNA-seq of Trachemys scripta elegans: adult red muscle anoxia 3
1 ILLUMINA (NextSeq 2000) run: 12.3M spots, 921.7M bases, 370Mb downloads

Design: Frozen tissue samples (~100 mg) of control vs 20-hour T.s. elegans red muscle were sent to Canada's Michael Smith Genome Sciences Centre (Vancouver, BC, Canada) for RNA extraction and subsequent small RNA sequencing. RNA was isolated using the EvoPure RNA Tissue Isolation Kit (Aline Biosciences, Woburn, MA; Cat# R-907T). The quality of RNA samples and constructed small RNA cDNA libraries were verified using an Agilent 2100 Bioanalyzer with the DNA 1000 chip (Agilent Technologies, Santa Clara, CA; Cat# 5067-1504). Small RNA sequencing was performed using the Illumina NextSeq2000 (San Diego, CA) platform which generated 75 bp single ends.
Submitted by: Carleton University
Study: MicroRNA sequencing in normoxic vs. 20 hour anoxic Trachemys scripta elegans red muscle
show Abstracthide Abstract
The red-eared slider (Trachemys scripta elegans) is a uniquely impressive vertebrate facultative anaerobe, capable of 18 weeks without oxygen at 3 degrees Celsius. Metabolic rate depression (~85%) is the core feature of anaerobiosis and is characterized by the suppression of costly processes like protein synthesis/decay and the cell cycle. The elucidation of microRNA (miRNA) action in support of animal extreme stress adaptation is increasing, but is currently lacking in T.s. elegans anoxia tolerance. Here, we use small RNA sequencing and subsequent bioinformatic analyses to identify differentially expressed miRNA and predicted target pathways in 20 h anoxic red skeletal muscle of red-eared slider turtles.
Sample: T.s. elegans red skeletal muscle 20 h anoxia 3
SAMN45044277 • SRS23351253 • All experiments • All runs
Library:
Name: TSEMUSA3
Instrument: NextSeq 2000
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Runs: 1 run, 12.3M spots, 921.7M bases, 370Mb
Run# of Spots# of BasesSizePublished
SRR3150082412,288,972921.7M370Mb2024-11-25

ID:
36294383

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