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SRX26443775: GSM8583617: Monascus purpureus mycelia under optimized metal ion, Sample 1, Day1; Monascus purpureus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 20.6M spots, 6.2G bases, 1.8Gb downloads

External Id: GSM8583617_r1
Submitted by: Changzhou University
Study: The optimum concentration ratio of zinc and magnesium for co-production of bioethanol and pigments for Monascus purpureus
show Abstracthide Abstract
Zinc and magnesium were the essectial activators for bioenzyme. Here, we assayed single factor assays for the effect of zinc and magnesium for Monascus purpureus.Then, we carried out transcriptome assays to uncover molecular mechanism of the enhanced fermentability of bioethanol and pigments for M. purpureus under the optimal metal ion concentration.This work would provide the fermentation process for biofuels and biochemicals. Overall design: We performed gene expression profiling analysis using from RNA-seq data from two different mycelia at one time point for Monascus purpureus.
Sample: Monascus purpureus mycelia under optimized metal ion, Sample 1, Day1
SAMN44366341 • SRS22959882 • All experiments • All runs
Library:
Name: GSM8583617
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was harvested using TRlzol Reagent (Life technologies, California, USA). 0.1-1.0 μg of total RNA was used for the construction of sequencing libraries. The library was constructed using NEBNext Ultra RNA Library Prep Kit for Illumina (NEB, E7530) and NEBNext Multiplex Oligos for Illumina (NEB, E7500). In briefly, the enriched mRNA was fragmented into approximately 200 nt RNA inserts, which were used to synthesize the first-strand cDNA and the second cDNA. The double-stranded cDNA were performed end-repair/dA-tail and adaptor ligation. The suitable fragments were isolated by Agencourt AMPure XP beads (Beckman Coulter, Inc.), and enriched by PCR amplification. Finally, the constructed cDNA libraries of M. purpureus were sequenced on a flow cell using an Illumina HiSeq™ sequencing platform.
Runs: 1 run, 20.6M spots, 6.2G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR3105934620,642,1466.2G1.8Gb2025-01-11

ID:
35731457

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