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SRX26375865: Whole genome sequencing of bacteria isolates from medical intensive care unit (MICU) environments
1 ILLUMINA (Illumina NovaSeq 6000) run: 6.9M spots, 2.1G bases, 677.2Mb downloads

Design: The sequencing library was prepared using the Illumina Nextera XT DNA Sample Preparation Kit following the kit protocol and sequenced at 2_150 bp.
Submitted by: Northwestern University
Study: Whole genome sequencing of bacteria isolates collected in medical intensive care unit (MICU) environments
show Abstracthide Abstract
We conducted a field survey of environmental locations in an MICU in Chicago, USA. We collected 219 swab samples from seven environmental locations (e.g., bedrails, nurse calls, doorsills, keyboards, light switches, proximal sink drains) over two sampling events (February and July, 2018). Among the environments, sink drains were identified as critical hotspots. The samples were cultivated, and the isolates were screened for chlorhexidine tolerance. A subset of 63 isolates were selected for whole-genome sequencing. Additionally, three whole-pipeline negative controls were sequenced alongside the isolate samples.
Sample: MICU environmental isolate
SAMN44073387 • SRS22899705 • All experiments • All runs
Library:
Name: S3
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 6.9M spots, 2.1G bases, 677.2Mb
Run# of Spots# of BasesSizePublished
SRR309849616,880,4362.1G677.2Mb2024-11-15

ID:
35624462

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